Salvaging Affymetrix probes after probe-level re-annotation

by Breit Timo M, Jonker Martijs J, Rauwerda Han, de Leeuw Wim C
Published 2008-08-01

Transcriptome analysis of a long-lived natural <it>Drosophila</it> variant: a prominent role of stress- and reproduction-genes in lifespan extension

by Doroszuk Agnieszka, Jonker Martijs J, Pul Nicolien, Breit Timo M, Zwaan Bas J
Published 2012-05-01

SigWinR; the SigWin-detector updated and ported to R

by Breit Timo M, Bruning Oskar, Inda Márcia A, Rauwerda Han, de Leeuw Wim C
Published 2009-10-01

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example

by de Leeuw Wim C, de Jong Mark, Rauwerda Han, Spaink Herman P, Breit Timo M
Published 2010-07-01

RNA isolation method for single embryo transcriptome analysis in zebrafish

by Spaink Herman P, Verkooijen Jurgo, Bruning Oskar, Rauwerda Han, de Jong Mark, Breit Timo M
Published 2010-03-01

Using R in Taverna: RShell v1.2

by Breit Timo M, Vet Paul E, Neerincx Pieter BT, Rauwerda Han, Wassink Ingo, Leunissen Jack AM, Nijholt Anton
Published 2009-07-01

RNA isolation for transcriptomics of human and mouse small skin biopsies

by Breit Timo M, de Vries Annemieke, Zwinderman Aeilko H, Radonic Teodora, Rodenburg Wendy, Bruning Oskar, de Jong Mark
Published 2011-10-01

SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences

by Wibisono Adianto, Vasunin Dmitry, Belloum Adam SZ, Roos Marco, van Batenburg Marinus F, Inda Márcia A, van Kampen Antoine HC, Breit Timo M
Published 2008-08-01

The core genome of the anaerobic oral pathogenic bacterium <it>Porphyromonas gingivalis</it>

by de Soet Johannes J, Laine Marja L, Breit Timo M, de Jong Mark, Jonker Martijs J, Wittink Floyd RA, Brunner Jorg, Crielaard Wim
Published 2010-09-01

Comparative gene expression profiling in two congenic mouse strains following <it>Bordetella pertussis </it>infection

by Demant Peter, Breit Timo M, van Kranen Henk J, Wester Piet W, Gremmer Eric R, Pennings Jeroen LA, Vandebriel Rob J, Banus Sander, Mooi Frits R, Hoebee Barbara, Kimman Tjeerd G
Published 2007-10-01