Mutant POLQ and POLZ/REV3L DNA polymerases may contribute to the favorable survival of patients with tumors with POLE mutations outside the exonuclease domain

by Fangjin Huang, Hisashi Tanaka, Beatrice S. Knudsen, Joanne K. Rutgers
Published 2020-08-01

Data integration from pathology slides for quantitative imaging of multiple cell types within the tumor immune cell infiltrate

by Zhaoxuan Ma, Stephen L. Shiao, Emi J. Yoshida, Steven Swartwood, Fangjin Huang, Michael E. Doche, Alice P. Chung, Beatrice S. Knudsen, Arkadiusz Gertych
Published 2017-09-01

A novel machine learning approach reveals latent vascular phenotypes predictive of renal cancer outcome

by Nathan Ing, Fangjin Huang, Andrew Conley, Sungyong You, Zhaoxuan Ma, Sergey Klimov, Chisato Ohe, Xiaopu Yuan, Mahul B. Amin, Robert Figlin, Arkadiusz Gertych, Beatrice S. Knudsen
Published 2017-10-01

A Non-integrating Lentiviral Approach Overcomes Cas9-Induced Immune Rejection to Establish an Immunocompetent Metastatic Renal Cancer Model

by Junhui Hu, Shiruyeh Schokrpur, Maani Archang, Kip Hermann, Allison C. Sharrow, Prateek Khanna, Jesse Novak, Sabina Signoretti, Rupal S. Bhatt, Beatrice S. Knudsen, Hua Xu, Lily Wu
Published 2018-06-01

Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries.

by Stacia K Wyman, Rachael K Parkin, Patrick S Mitchell, Brian R Fritz, Kathy O'Briant, Andrew K Godwin, Nicole Urban, Charles W Drescher, Beatrice S Knudsen, Muneesh Tewari
Published 2009-01-01

DNA methylation profiles of ovarian epithelial carcinoma tumors and cell lines.

by Sahar Houshdaran, Sarah Hawley, Chana Palmer, Mihaela Campan, Mari N Olsen, Aviva P Ventura, Beatrice S Knudsen, Charles W Drescher, Nicole D Urban, Patrick O Brown, Peter W Laird
Published 2010-02-01

Spatial Mapping of Myeloid Cells and Macrophages by Multiplexed Tissue Staining

by Joshua Saylor, Zhaoxuan Ma, Helen S. Goodridge, Fangjin Huang, Anne E. Cress, Stephen J. Pandol, Stephen L. Shiao, Adriana C. Vidal, Lily Wu, Nicholas G. Nickols, Arkadiusz Gertych, Beatrice S. Knudsen
Published 2018-12-01

Publisher Correction to: Deep learning-based image analysis methods for brightfield-acquired multiplex immunohistochemistry images

by Danielle J. Fassler, Shahira Abousamra, Rajarsi Gupta, Chao Chen, Maozheng Zhao, David Paredes, Syeda Areeha Batool, Beatrice S. Knudsen, Luisa Escobar-Hoyos, Kenneth R. Shroyer, Dimitris Samaras, Tahsin Kurc, Joel Saltz
Published 2020-09-01

Deep learning-based image analysis methods for brightfield-acquired multiplex immunohistochemistry images

by Danielle J. Fassler, Shahira Abousamra, Rajarsi Gupta, Chao Chen, Maozheng Zhao, David Paredes, Syeda Areeha Batool, Beatrice S. Knudsen, Luisa Escobar-Hoyos, Kenneth R. Shroyer, Dimitris Samaras, Tahsin Kurc, Joel Saltz
Published 2020-07-01

Circulating microRNA profiling identifies a subset of metastatic prostate cancer patients with evidence of cancer-associated hypoxia.

by Heather H Cheng, Patrick S Mitchell, Evan M Kroh, Alexander E Dowell, Lisly Chéry, Javed Siddiqui, Peter S Nelson, Robert L Vessella, Beatrice S Knudsen, Arul M Chinnaiyan, Kenneth J Pienta, Colm Morrissey, Muneesh Tewari
Published 2013-01-01

Chromosomal instability in untreated primary prostate cancer as an indicator of metastatic potential

by Eric T. Miller, Sungyong You, Radu M. Cadaneanu, Minhyung Kim, Junhee Yoon, Sandy T. Liu, Xinmin Li, Lorna Kwan, Jennelle Hodge, Michael J. Quist, Catherine S. Grasso, Michael S. Lewis, Beatrice S. Knudsen, Michael R. Freeman, Isla P. Garraway
Published 2020-05-01

Keratin 13 Is Enriched in Prostate Tubule-Initiating Cells and May Identify Primary Prostate Tumors that Metastasize to the Bone.

by Sandy Liu, Radu M Cadaneanu, Baohui Zhang, Lihong Huo, Kevin Lai, Xinmin Li, Colette Galet, Tristan R Grogan, David Elashoff, Stephen J Freedland, Matthew Rettig, William J Aronson, Beatrice S Knudsen, Michael S Lewis, Isla P Garraway
Published 2016-01-01

Proteomic analysis of ovarian cancer cells reveals dynamic processes of protein secretion and shedding of extra-cellular domains.

by Vitor M Faça, Aviva P Ventura, Mathew P Fitzgibbon, Sandra R Pereira-Faça, Sharon J Pitteri, Ann E Green, Renee C Ireton, Qing Zhang, Hong Wang, Kathy C O'Briant, Charles W Drescher, Michèl Schummer, Martin W McIntosh, Beatrice S Knudsen, Samir M Hanash
Published 2008-01-01