Automating parameter selection to avoid implausible biological pathway models

by Chris S. Magnano, Anthony Gitter
Published 2021-02-01

Lag penalized weighted correlation for time series clustering

by Thevaa Chandereng, Anthony Gitter
Published 2020-01-01

Multitask learning of signaling and regulatory networks with application to studying human response to flu.

by Siddhartha Jain, Anthony Gitter, Ziv Bar-Joseph
Published 2014-12-01

A network-based approach for predicting missing pathway interactions.

by Saket Navlakha, Anthony Gitter, Ziv Bar-Joseph
Published 2012-01-01

Open collaborative writing with Manubot.

by Daniel S Himmelstein, Vincent Rubinetti, David R Slochower, Dongbo Hu, Venkat S Malladi, Casey S Greene, Anthony Gitter
Published 2019-06-01

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package.

by Nurcan Tuncbag, Sara J C Gosline, Amanda Kedaigle, Anthony R Soltis, Anthony Gitter, Ernest Fraenkel
Published 2016-04-01

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.

by Matthew E MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J Coon, Audrey P Gasch
Published 2018-05-01

Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism.

by Zoi E Sychev, Alex Hu, Terri A DiMaio, Anthony Gitter, Nathan D Camp, William S Noble, Alejandro Wolf-Yadlin, Michael Lagunoff
Published 2017-03-01

Predicting kinase inhibitors using bioactivity matrix derived informer sets.

by Huikun Zhang, Spencer S Ericksen, Ching-Pei Lee, Gene E Ananiev, Nathan Wlodarchak, Peng Yu, Julie C Mitchell, Anthony Gitter, Stephen J Wright, F Michael Hoffmann, Scott A Wildman, Michael A Newton
Published 2019-08-01

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

by Ali Sinan Köksal, Kirsten Beck, Dylan R. Cronin, Aaron McKenna, Nathan D. Camp, Saurabh Srivastava, Matthew E. MacGilvray, Rastislav Bodík, Alejandro Wolf-Yadlin, Ernest Fraenkel, Jasmin Fisher, Anthony Gitter
Published 2018-09-01