Cancer gene expression profiles associated with clinical outcomes to chemotherapy treatments

by Nicolas Borisov, Maxim Sorokin, Victor Tkachev, Andrew Garazha, Anton Buzdin
Published 2020-09-01

Flexible Data Trimming Improves Performance of Global Machine Learning Methods in Omics-Based Personalized Oncology

by Victor Tkachev, Maxim Sorokin, Constantin Borisov, Andrew Garazha, Anton Buzdin, Nicolas Borisov
Published 2020-01-01

Shambhala: a platform-agnostic data harmonizer for gene expression data

by Nicolas Borisov, Irina Shabalina, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Andrey Pulin, Ilya I. Eremin, Anton Buzdin
Published 2019-02-01

Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins

by Daniil Nikitin, Daniil Nikitin, Dmitry Penzar, Andrew Garazha, Andrew Garazha, Maxim Sorokin, Maxim Sorokin, Maxim Sorokin, Victor Tkachev, Nicolas Borisov, Nicolas Borisov, Alexander Poltorak, Vladimir Prassolov, Anton A. Buzdin, Anton A. Buzdin, Anton A. Buzdin, Anton A. Buzdin
Published 2018-01-01

Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles

by Nicolas Borisov, Anna Sergeeva, Maria Suntsova, Maria Suntsova, Mikhail Raevskiy, Nurshat Gaifullin, Larisa Mendeleeva, Alexander Gudkov, Maria Nareiko, Andrew Garazha, Andrew Garazha, Victor Tkachev, Victor Tkachev, Xinmin Li, Maxim Sorokin, Maxim Sorokin, Maxim Sorokin, Vadim Surin, Anton Buzdin, Anton Buzdin, Anton Buzdin
Published 2021-04-01

Correction: Nikitin, D., et al. Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. <i>Cells</i> 2019, <i>8...

by Daniil Nikitin, Andrew Garazha, Maxim Sorokin, Dmitry Penzar, Victor Tkachev, Alexander Markov, Nurshat Gaifullin, Pieter Borger, Alexander Poltorak, Anton Buzdin
Published 2019-08-01

Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution

by Daniil Nikitin, Andrew Garazha, Maxim Sorokin, Dmitry Penzar, Victor Tkachev, Alexander Markov, Nurshat Gaifullin, Pieter Borger, Alexander Poltorak, Anton Buzdin
Published 2019-02-01

RNA Sequencing in Comparison to Immunohistochemistry for Measuring Cancer Biomarkers in Breast Cancer and Lung Cancer Specimens

by Maxim Sorokin, Kirill Ignatev, Elena Poddubskaya, Uliana Vladimirova, Nurshat Gaifullin, Dmitriy Lantsov, Andrew Garazha, Daria Allina, Maria Suntsova, Victoria Barbara, Anton Buzdin
Published 2020-05-01

Oncobox Bioinformatical Platform for Selecting Potentially Effective Combinations of Target Cancer Drugs Using High-Throughput Gene Expression Data

by Maxim Sorokin, Roman Kholodenko, Maria Suntsova, Galina Malakhova, Andrew Garazha, Irina Kholodenko, Elena Poddubskaya, Dmitriy Lantsov, Ivan Stilidi, Petr Arhiri, Andreyan Osipov, Anton Buzdin
Published 2018-09-01

FLOating-Window Projective Separator (FloWPS): A Data Trimming Tool for Support Vector Machines (SVM) to Improve Robustness of the Classifier

by Victor Tkachev, Maxim Sorokin, Maxim Sorokin, Artem Mescheryakov, Alexander Simonov, Andrew Garazha, Anton Buzdin, Anton Buzdin, Anton Buzdin, Ilya Muchnik, Nicolas Borisov, Nicolas Borisov
Published 2019-01-01

Algorithmic Annotation of Functional Roles for Components of 3,044 Human Molecular Pathways

by Maxim Sorokin, Maxim Sorokin, Maxim Sorokin, Nicolas Borisov, Nicolas Borisov, Denis Kuzmin, Alexander Gudkov, Marianna Zolotovskaia, Andrew Garazha, Anton Buzdin, Anton Buzdin, Anton Buzdin, Anton Buzdin
Published 2021-02-01

Intratumoral Heterogeneity and Longitudinal Changes in Gene Expression Predict Differential Drug Sensitivity in Newly Diagnosed and Recurrent Glioblastoma

by Ella L. Kim, Maxim Sorokin, Sven Rainer Kantelhardt, Darius Kalasauskas, Bettina Sprang, Julian Fauss, Florian Ringel, Andrew Garazha, Eugene Albert, Nurshat Gaifullin, Christian Hartmann, Nicole Naumann, Sven-Ernö Bikar, Alf Giese, Anton Buzdin
Published 2020-02-01

Algorithmically Deduced <i>FREM2</i> Molecular Pathway Is a Potent Grade and Survival Biomarker of Human Gliomas

by Marianna Zolotovskaia, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Ella Kim, Sven Rainer Kantelhardt, Sven-Ernö Bikar, Alja Zottel, Neja Šamec, Denis Kuzmin, Bettina Sprang, Alexey Moisseev, Alf Giese, Victor Efimov, Ivana Jovčevska, Anton Buzdin
Published 2021-08-01

DNA repair pathway activation features in follicular and papillary thyroid tumors, interrogated using 95 experimental RNA sequencing profiles

by Uliana Vladimirova, Pavel Rumiantsev, Marianna Zolotovskaia, Eugene Albert, Aleksander Abrosimov, Konstantin Slashchuk, Petr Nikiforovich, Olga Chukhacheva, Nurshat Gaifullin, Maria Suntsova, Galina Zakharova, Alexander Glusker, Daniil Nikitin, Andrew Garazha, Xinmin Li, Dmitriy Kamashev, Alexei Drobyshev, Irina Kochergina-Nikitskaya, Maxim Sorokin, Anton Buzdin
Published 2021-03-01