Correcting the site frequency spectrum for divergence-based ascertainment.

by Andrew D Kern
Published 2009-01-01

The Effect of Common Inversion Polymorphisms In(2L)t and In(3R)Mo on Patterns of Transcriptional Variation in Drosophila melanogaster

by Erik Lavington, Andrew D. Kern
Published 2017-11-01

S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning.

by Daniel R Schrider, Andrew D Kern
Published 2016-03-01

diploS/HIC: An Updated Approach to Classifying Selective Sweeps

by Andrew D. Kern, Daniel R. Schrider
Published 2018-06-01

Predicting geographic location from genetic variation with deep neural networks

by CJ Battey, Peter L Ralph, Andrew D Kern
Published 2020-06-01

Visualizing population structure with variational autoencoders

by C J Battey, Gabrielle C Coffing, Andrew D Kern
Published 2021-01-01

Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia.

by Daniel R Schrider, Julien Ayroles, Daniel R Matute, Andrew D Kern
Published 2018-04-01

GC-biased evolution near human accelerated regions.

by Sol Katzman, Andrew D Kern, Katherine S Pollard, Sofie R Salama, David Haussler
Published 2010-05-01

Forces shaping the fastest evolving regions in the human genome.

by Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch, Kate R Rosenbloom, Jim Kent, David Haussler
Published 2006-10-01

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans.

by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley
Published 2007-11-01

A community-maintained standard library of population genetic models

by Jeffrey R Adrion, Christopher B Cole, Noah Dukler, Jared G Galloway, Ariella L Gladstein, Graham Gower, Christopher C Kyriazis, Aaron P Ragsdale, Georgia Tsambos, Franz Baumdicker, Jedidiah Carlson, Reed A Cartwright, Arun Durvasula, Ilan Gronau, Bernard Y Kim, Patrick McKenzie, Philipp W Messer, Ekaterina Noskova, Diego Ortega-Del Vecchyo, Fernando Racimo, Travis J Struck, Simon Gravel, Ryan N Gutenkunst, Kirk E Lohmueller, Peter L Ralph, Daniel R Schrider, Adam Siepel, Jerome Kelleher, Andrew D Kern
Published 2020-06-01