Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus

by Alina Renz, Andreas Dräger
Published 2021-06-01

Computational Model Informs Effective Control Interventions against <i>Y. enterocolitica</i> Co-Infection

by Reihaneh Mostolizadeh, Andreas Dräger
Published 2020-11-01

First Genome-Scale Metabolic Model of <i>Dolosigranulum pigrum</i> Confirms Multiple Auxotrophies

by Alina Renz, Lina Widerspick, Andreas Dräger
Published 2021-04-01

Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target

by Alina Renz , Lina Widerspick , Andreas Dräger 
Published 2021-05-01

SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology

by Alexander Dörr, Roland Keller, Andreas Zell, Andreas Dräger
Published 2014-12-01

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors.

by Johannes Eichner, Florian Topf, Andreas Dräger, Clemens Wrzodek, Dierk Wanke, Andreas Zell
Published 2013-01-01

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis.

by Michael Römer, Johannes Eichner, Andreas Dräger, Clemens Wrzodek, Finja Wrzodek, Andreas Zell
Published 2016-01-01

Community standards to facilitate development and address challenges in metabolic modeling

by Maureen A Carey, Andreas Dräger, Moritz E Beber, Jason A Papin, James T Yurkovich
Published 2020-08-01

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.

by Zachary A King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E Lewis, Bernhard O Palsson
Published 2015-08-01

An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism

by Dawson D. Payne, Alina Renz, Laura J. Dunphy, Taylor Lewis, Andreas Dräger, Jason A. Papin
Published 2021-10-01

Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling.

by Roland Keller, Marcus Klein, Maria Thomas, Andreas Dräger, Ute Metzger, Markus F Templin, Thomas O Joos, Wolfgang E Thasler, Andreas Zell, Ulrich M Zanger
Published 2016-01-01

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes

by Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso
Published 2019-04-01

Visualizing metabolic network dynamics through time-series metabolomic data

by Lea F. Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Óttar Rolfsson, Julian Heinrich, Andreas Dräger
Published 2020-04-01

SBML Level 3: an extensible format for the exchange and reuse of biological models

by Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomáš Helikar, Stefan Hoops, Rahuman S Malik‐Sheriff, Stuart L Moodie, Ion I Moraru, Chris J Myers, Aurélien Naldi, Brett G Olivier, Sven Sahle, James C Schaff, Lucian P Smith, Maciej J Swat, Denis Thieffry, Leandro Watanabe, Darren J Wilkinson, Michael L Blinov, Kimberly Begley, James R Faeder, Harold F Gómez, Thomas M Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L Lister, Daniel Lucio, Eric Mjolsness, Carole J Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A Shaffer, Bruce E Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier‐Schellersheim, Herbert M Sauro, Bernhard Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C Doyle, Michael Hucka, SBML Level 3 Community members
Published 2020-08-01