Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling

by Garold Fuks, Michael Elgart, Amnon Amir, Amit Zeisel, Peter J. Turnbaugh, Yoav Soen, Noam Shental
Published 2018-01-01

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes

by Lingjing Jiang, Amnon Amir, James T. Morton, Ruth Heller, Ery Arias-Castro, Rob Knight, Josh D. Neufeld
Published 2017-11-01

Antibiotic Treatment Does Not Ameliorate the Metabolic Changes in Rats Presenting Dysbiosis After Consuming a High Fructose Diet

by Ariel Bier, Rawan Khasbab, Yael Haberman, Tzipi Braun, Rotem Hadar, Katya Sosnovski, Amnon Amir, Avshalom Leibowitz, Ehud Grossman
Published 2020-01-01

SARS-CoV-2 does not have a strong effect on the nasopharyngeal microbial composition

by Tzipi Braun, Shiraz Halevi, Rotem Hadar, Gilate Efroni, Efrat Glick Saar, Natahan Keller, Amnon Amir, Sharon Amit, Yael Haberman
Published 2021-04-01

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

by Se Jin Song, Amnon Amir, Jessica L. Metcalf, Katherine R. Amato, Zhenjiang Zech Xu, Greg Humphrey, Rob Knight, M. Denise Dearing
Published 2016-05-01

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

by Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Justine Debelius, James T. Morton, Embriette Hyde, Adam Robbins-Pianka, Rob Knight, Mani Arumugam
Published 2017-03-01

Calour: an Interactive, Microbe-Centric Analysis Tool

by Zhenjiang Zech Xu, Amnon Amir, Jon Sanders, Qiyun Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Published 2019-01-01

Alterations in the Gut Microbiome in the Progression of Cirrhosis to Hepatocellular Carcinoma

by Yelena Lapidot, Amnon Amir, Rita Nosenko, Atara Uzan-Yulzari, Ella Veitsman, Oranit Cohen-Ezra, Yana Davidov, Peretz Weiss, Tanya Bradichevski, Shlomo Segev, Omry Koren, Michal Safran, Ziv Ben-Ari
Published 2020-06-01

Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations.

by Doratha A Byrd, Jun Chen, Emily Vogtmann, Autumn Hullings, Se Jin Song, Amnon Amir, Muhammad G Kibriya, Habibul Ahsan, Yu Chen, Heidi Nelson, Rob Knight, Jianxin Shi, Nicholas Chia, Rashmi Sinha
Published 2019-01-01

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples

by Jeremiah J. Minich, Qiyun Zhu, Stefan Janssen, Ryan Hendrickson, Amnon Amir, Russ Vetter, John Hyde, Megan M. Doty, Kristina Stillwell, James Benardini, Jae H. Kim, Eric E. Allen, Kasthuri Venkateswaran, Rob Knight
Published 2018-03-01

Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites

by Lavanya Reddivari, D. N. Rao Veeramachaneni, William A. Walters, Catherine Lozupone, Jennifer Palmer, M. K. Kurundu Hewage, Rohil Bhatnagar, Amnon Amir, Mary J. Kennett, Rob Knight, Jairam K. P. Vanamala, Thomas Sharpton
Published 2017-10-01

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

by Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Evguenia Kopylova, James T. Morton, Zhenjiang Zech Xu, Eric P. Kightley, Luke R. Thompson, Embriette R. Hyde, Antonio Gonzalez, Rob Knight, Jack A. Gilbert
Published 2017-03-01

Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

by Tal Luzzatto-Knaan, Neha Garg, Mingxun Wang, Evgenia Glukhov, Yao Peng, Gail Ackermann, Amnon Amir, Brendan M Duggan, Sergey Ryazanov, Lena Gerwick, Rob Knight, Theodore Alexandrov, Nuno Bandeira, William H Gerwick, Pieter C Dorrestein
Published 2017-05-01

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction

by Youlian Zhou, Zhenjiang Zech Xu, Yan He, Yunsheng Yang, Le Liu, Qianyun Lin, Yuqiang Nie, Mingsong Li, Fachao Zhi, Side Liu, Amnon Amir, Antonio González, Anupriya Tripathi, Minhu Chen, Gary D. Wu, Rob Knight, Hongwei Zhou, Ye Chen, Danilo Ercolini
Published 2018-01-01

The impact of skin care products on skin chemistry and microbiome dynamics

by Amina Bouslimani, Ricardo da Silva, Tomasz Kosciolek, Stefan Janssen, Chris Callewaert, Amnon Amir, Kathleen Dorrestein, Alexey V. Melnik, Livia S. Zaramela, Ji-Nu Kim, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Caitriona Brennan, Tal Luzzatto-Knaan, Gail Ackermann, Daniel McDonald, Karsten Zengler, Rob Knight, Pieter C. Dorrestein
Published 2019-06-01