Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods

by Ivar Grytten, Knut D. Rand, Alexander J. Nederbragt, Geir K. Sandve
Published 2020-04-01

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes.

by Ivar Grytten, Knut D Rand, Alexander J Nederbragt, Geir O Storvik, Ingrid K Glad, Geir K Sandve
Published 2019-02-01

Coordinates and intervals in graph-based reference genomes

by Knut D. Rand, Ivar Grytten, Alexander J. Nederbragt, Geir O. Storvik, Ingrid K. Glad, Geir K. Sandve
Published 2017-05-01

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach func...

by Kai K. Lie, Ole K. Tørresen, Monica Hongrø Solbakken, Ivar Rønnestad, Ave Tooming-Klunderud, Alexander J. Nederbragt, Sissel Jentoft, Øystein Sæle
Published 2018-03-01

Genome fragmentation is not confined to the peridinin plastid in dinoflagellates.

by Mari Espelund, Marianne A Minge, Tove M Gabrielsen, Alexander J Nederbragt, Kamran Shalchian-Tabrizi, Christian Otis, Monique Turmel, Claude Lemieux, Kjetill S Jakobsen
Published 2012-01-01

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats

by Ole K. Tørresen, Marine S. O. Brieuc, Monica H. Solbakken, Elin Sørhus, Alexander J. Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Published 2018-04-01

Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.

by Bastiaan Star, Alexander J Nederbragt, Marianne H S Hansen, Morten Skage, Gregor D Gilfillan, Ian R Bradbury, Christophe Pampoulie, Nils Chr Stenseth, Kjetill S Jakobsen, Sissel Jentoft
Published 2014-01-01

Genome evolution of a tertiary dinoflagellate plastid.

by Tove M Gabrielsen, Marianne A Minge, Mari Espelund, Ave Tooming-Klunderud, Vishwanath Patil, Alexander J Nederbragt, Christian Otis, Monique Turmel, Kamran Shalchian-Tabrizi, Claude Lemieux, Kjetill S Jakobsen
Published 2011-04-01

Mitochondrial genome variation of Atlantic cod

by Tor Erik Jørgensen, Bård Ove Karlsen, Åse Emblem, Ragna Breines, Morten Andreassen, Trine B. Rounge, Alexander J. Nederbragt, Kjetill S. Jakobsen, Marianne Nymark, Anita Ursvik, Dag H. Coucheron, Lars Martin Jakt, Jarle T. Nordeide, Truls Moum, Steinar D. Johansen
Published 2018-06-01