Quickly identifying identical and closely related subjects in large databases using genotype data.

by Yumi Jin, Alejandro A Schäffer, Stephen T Sherry, Michael Feolo
Published 2017-01-01

In vitro and in vivo identification of clinically approved drugs that modify ACE2 expression

by Sanju Sinha, Kuoyuan Cheng, Alejandro A Schäffer, Kenneth Aldape, Eyal Schiff, Eytan Ruppin
Published 2020-07-01

Distinct genetic alterations in colorectal cancer.

by Hassan Ashktorab, Alejandro A Schäffer, Mohammad Daremipouran, Duane T Smoot, Edward Lee, Hassan Brim
Published 2010-01-01

Stable Karyotypes in Epithelial Cancer Cell Lines Despite High Rates of Ongoing Structural and Numerical Chromosomal Instability

by Anna V. Roschke, Kristen Stover, Giovanni Tonon, Alejandro A. Schäffer, Ilan R. Kirsch
Published 2002-01-01

GRAF-pop: A Fast Distance-Based Method To Infer Subject Ancestry from Multiple Genotype Datasets Without Principal Components Analysis

by Yumi Jin, Alejandro A. Schaffer, Michael Feolo, J. Bradley Holmes, Brandi L. Kattman
Published 2019-08-01

Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics.

by Salim Akhter Chowdhury, Stanley E Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A Schäffer, Russell Schwartz
Published 2014-07-01

VADR: validation and annotation of virus sequence submissions to GenBank

by Alejandro A. Schäffer, Eneida L. Hatcher, Linda Yankie, Lara Shonkwiler, J. Rodney Brister, Ilene Karsch-Mizrachi, Eric P. Nawrocki
Published 2020-05-01

Novel gene acquisition on carnivore Y chromosomes.

by William J Murphy, A J Pearks Wilkerson, Terje Raudsepp, Richa Agarwala, Alejandro A Schäffer, Roscoe Stanyon, Bhanu P Chowdhary
Published 2006-03-01

Genomic profiling of advanced-stage oral cancers reveals chromosome 11q alterations as markers of poor clinical outcome.

by Srikant Ambatipudi, Moritz Gerstung, Ravindra Gowda, Prathamesh Pai, Anita M Borges, Alejandro A Schäffer, Niko Beerenwinkel, Manoj B Mahimkar
Published 2011-02-01

The GENDULF algorithm: mining transcriptomics to uncover modifier genes for monogenic diseases

by Noam Auslander, Daniel M Ramos, Ivette Zelaya, Hiren Karathia, Thomas O. Crawford, Alejandro A Schäffer, Charlotte J Sumner, Eytan Ruppin
Published 2020-12-01

Genomic aberrations in an African American colorectal cancer cohort reveals a MSI-specific profile and chromosome X amplification in male patients.

by Hassan Brim, Edward Lee, Mones S Abu-Asab, Mohamed Chaouchi, Hadi Razjouyan, Hassanzadeh Namin, Ajay Goel, Alejandro A Schäffer, Hassan Ashktorab
Published 2012-01-01

Case-control study of vitamin D, dickkopf homolog 1 (DKK1) gene methylation, VDR gene polymorphism and the risk of colon adenoma in African Americans.

by Hassan Ashktorab, Bijou Nguza, Mehrnaz Fatemi, Mehdi Nouraie, Duane T Smoot, Alejandro A Schäffer, Sonia S Kupfer, Carlos A Camargo, Hassan Brim
Published 2011-01-01

Identification of drugs associated with reduced severity of COVID-19 – a case-control study in a large population

by Ariel Israel, Alejandro A Schäffer, Assi Cicurel, Kuoyuan Cheng, Sanju Sinha, Eyal Schiff, Ilan Feldhamer, Ameer Tal, Gil Lavie, Eytan Ruppin
Published 2021-07-01

FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe.

by E Michael Gertz, Salim Akhter Chowdhury, Woei-Jyh Lee, Darawalee Wangsa, Kerstin Heselmeyer-Haddad, Thomas Ried, Russell Schwartz, Alejandro A Schäffer
Published 2016-01-01

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

by Alejandro A. Schäffer, Richard McVeigh, Barbara Robbertse, Conrad L. Schoch, Anjanette Johnston, Beverly A. Underwood, Ilene Karsch-Mizrachi, Eric P. Nawrocki
Published 2021-08-01

An integrative CGH, MSI and candidate genes methylation analysis of colorectal tumors.

by Hassan Brim, Mones S Abu-Asab, Mehdi Nouraie, Jose Salazar, Jim Deleo, Hadi Razjouyan, Pooneh Mokarram, Alejandro A Schaffer, Fakhraddin Naghibhossaini, Hassan Ashktorab
Published 2014-01-01

Chromosomal Alterations and Gene Expression Changes Associated with the Progression of Leukoplakia to Advanced Gingivobuccal Cancer

by Priyanka G. Bhosale, Simona Cristea, Srikant Ambatipudi, Rajiv S. Desai, Rajiv Kumar, Asawari Patil, Shubhada Kane, Anita M. Borges, Alejandro A. Schäffer, Niko Beerenwinkel, Manoj B. Mahimkar
Published 2017-06-01

Ancestral haplotype reconstruction in endogamous populations using identity-by-descent.

by Kelly Finke, Michael Kourakos, Gabriela Brown, Huyen Trang Dang, Shi Jie Samuel Tan, Yuval B Simons, Shweta Ramdas, Alejandro A Schäffer, Rachel L Kember, Maja Bućan, Sara Mathieson
Published 2021-02-01

Living the good life? Mortality and hospital utilization patterns in the Old Order Amish.

by Braxton D Mitchell, Woei-Jyh Lee, Magdalena I Tolea, Kelsey Shields, Zahra Ashktorab, Laurence S Magder, Kathleen A Ryan, Toni I Pollin, Patrick F McArdle, Alan R Shuldiner, Alejandro A Schäffer
Published 2012-01-01

Author Correction: Mutations in COMP cause familial carpal tunnel syndrome

by Chunyu Li, Ni Wang, Alejandro A. Schäffer, Xilin Liu, Zhuo Zhao, Gene Elliott, Lisa Garrett, Nga Ting Choi, Yueshu Wang, Yufa Wang, Cheng Wang, Jin Wang, Danny Chan, Peiqiang Su, Shusen Cui, Yingzi Yang, Bo Gao
Published 2020-08-01