Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues

by Ruidong Xiang, Victor Hutton Oddy, Alan L. Archibald, Phillip E. Vercoe, Brian P. Dalrymple
Published 2016-03-01

Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human

by Richard I. Kuo, Elizabeth Tseng, Lel Eory, Ian R. Paton, Alan L. Archibald, David W. Burt
Published 2017-04-01

Illuminating the dark side of the human transcriptome with long read transcript sequencing

by Richard I. Kuo, Yuanyuan Cheng, Runxuan Zhang, John W. S. Brown, Jacqueline Smith, Alan L. Archibald, David W. Burt
Published 2020-10-01

Identification of low-confidence regions in the pig reference genome (Sscrofa10.2)

by Amanda eWarr, Christelle eRobert, David eHume, Alan L Archibald, Nader eDeeb, Mick eWatson
Published 2015-11-01

Precision engineering for PRRSV resistance in pigs: Macrophages from genome edited pigs lacking CD163 SRCR5 domain are fully resistant to both PRRSV genotypes while maintaining bio...

by Christine Burkard, Simon G Lillico, Elizabeth Reid, Ben Jackson, Alan J Mileham, Tahar Ait-Ali, C Bruce A Whitelaw, Alan L Archibald
Published 2017-02-01

Lawsonia intracellularis exploits β-catenin/Wnt and Notch signalling pathways during infection of intestinal crypt to alter cell homeostasis and promote cell proliferation.

by Yang W Huan, Rebecca J Bengtsson, Neil MacIntyre, Jack Guthrie, Heather Finlayson, Sionagh H Smith, Alan L Archibald, Tahar Ait-Ali
Published 2017-01-01

Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals

by Christine Tait-Burkard, Andrea Doeschl-Wilson, Mike J. McGrew, Alan L. Archibald, Helen M. Sang, Ross D. Houston, C. Bruce Whitelaw, Mick Watson
Published 2018-11-01

Signatures of diversifying selection in European pig breeds.

by Samantha Wilkinson, Zen H Lu, Hendrik-Jan Megens, Alan L Archibald, Chris Haley, Ian J Jackson, Martien A M Groenen, Richard P M A Crooijmans, Rob Ogden, Pamela Wiener
Published 2013-04-01

Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression

by Stephen J. Bush, Mary E. B. McCulloch, Charity Muriuki, Mazdak Salavati, Gemma M. Davis, Iseabail L. Farquhar, Zofia M. Lisowski, Alan L. Archibald, David A. Hume, Emily L. Clark
Published 2019-02-01

Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional Atlas

by Kim M. Summers, Stephen J. Bush, Chunlei Wu, Andrew I. Su, Charity Muriuki, Emily L. Clark, Heather A. Finlayson, Lel Eory, Lindsey A. Waddell, Richard Talbot, Alan L. Archibald, David A. Hume
Published 2020-02-01

Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs.

by Oswald Matika, Diego Robledo, Ricardo Pong-Wong, Stephen C Bishop, Valentina Riggio, Heather Finlayson, Natalie R Lowe, Annabelle E Hoste, Grant A Walling, Jorge Del-Pozo, Alan L Archibald, John A Woolliams, Ross D Houston
Published 2019-01-01

Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0)

by Mazdak Salavati, Mazdak Salavati, Alex Caulton, Alex Caulton, Richard Clark, Iveta Gazova, Iveta Gazova, Timothy P. L. Smith, Kim C. Worley, Noelle E. Cockett, Alan L. Archibald, Shannon M. Clarke, Brenda M. Murdoch, Emily L. Clark, Emily L. Clark
Published 2020-10-01

A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis)

by Rachel Young, Lucas Lefevre, Stephen J. Bush, Akshay Joshi, Salam Herojeet Singh, Santosh Kumar Jadhav, Velu Dhanikachalam, Zofia M. Lisowski, Daniela Iamartino, Kim M. Summers, John L. Williams, Alan L. Archibald, Suresh Gokhale, Satish Kumar, Satish Kumar, David A. Hume
Published 2019-07-01

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

by Emily L Clark, Stephen J Bush, Mary E B McCulloch, Iseabail L Farquhar, Rachel Young, Lucas Lefevre, Clare Pridans, Hiu G Tsang, Chunlei Wu, Cyrus Afrasiabi, Mick Watson, C Bruce Whitelaw, Tom C Freeman, Kim M Summers, Alan L Archibald, David A Hume
Published 2017-09-01

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication

by Prasun Dutta, Andrea Talenti, Rachel Young, Siddharth Jayaraman, Rebecca Callaby, Santosh Kumar Jadhav, Velu Dhanikachalam, Mayakannan Manikandan, Bhim B. Biswa, Wai Y. Low, John L. Williams, Elizabeth Cook, Phil Toye, Eileen Wall, Appolinaire Djikeng, Karen Marshall, Alan L. Archibald, Suresh Gokhale, Satish Kumar, David A. Hume, James G. D. Prendergast
Published 2020-09-01

Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology.

by Antonio M Ramos, Richard P M A Crooijmans, Nabeel A Affara, Andreia J Amaral, Alan L Archibald, Jonathan E Beever, Christian Bendixen, Carol Churcher, Richard Clark, Patrick Dehais, Mark S Hansen, Jakob Hedegaard, Zhi-Liang Hu, Hindrik H Kerstens, Andy S Law, Hendrik-Jan Megens, Denis Milan, Danny J Nonneman, Gary A Rohrer, Max F Rothschild, Tim P L Smith, Robert D Schnabel, Curt P Van Tassell, Jeremy F Taylor, Ralph T Wiedmann, Lawrence B Schook, Martien A M Groenen
Published 2009-08-01