GEMINI: integrative exploration of genetic variation and genome annotations.

by Umadevi Paila, Brad A Chapman, Rory Kirchner, Aaron R Quinlan
Published 2013-01-01

Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays

by Thomas A Sasani, Kelsey R Cone, Aaron R Quinlan, Nels C Elde
Published 2018-08-01

Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data

by Michael J. Cormier, Jonathan R. Belyeu, Brent S. Pedersen, Joseph Brown, Johannes Köster, Aaron R. Quinlan
Published 2021-04-01

OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations

by Thomas J. Nicholas, Michael J. Cormier, Xiaomeng Huang, Yi Qiao, Gabor T. Marth, Aaron R. Quinlan
Published 2021-03-01

Large, three-generation human families reveal post-zygotic mosaicism and variability in germline mutation accumulation

by Thomas A Sasani, Brent S Pedersen, Ziyue Gao, Lisa Baird, Molly Przeworski, Lynn B Jorde, Aaron R Quinlan
Published 2019-09-01

Samplot: a platform for structural variant visual validation and automated filtering

by Jonathan R. Belyeu, Murad Chowdhury, Joseph Brown, Brent S. Pedersen, Michael J. Cormier, Aaron R. Quinlan, Ryan M. Layer
Published 2021-05-01

XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data.

by Jordan A Berg, Jonathan R Belyeu, Jeffrey T Morgan, Yeyun Ouyang, Alex J Bott, Aaron R Quinlan, Jason Gertz, Jared Rutter
Published 2020-01-01

Somalier: rapid relatedness estimation for cancer and germline studies using efficient genome sketches

by Brent S. Pedersen, Preetida J. Bhetariya, Joe Brown, Stephanie N. Kravitz, Gabor Marth, Randy L. Jensen, Mary P. Bronner, Hunter R. Underhill, Aaron R. Quinlan
Published 2020-07-01

Effective variant filtering and expected candidate variant yield in studies of rare human disease

by Brent S. Pedersen, Joe M. Brown, Harriet Dashnow, Amelia D. Wallace, Matt Velinder, Martin Tristani-Firouzi, Joshua D. Schiffman, Tatiana Tvrdik, Rong Mao, D. Hunter Best, Pinar Bayrak-Toydemir, Aaron R. Quinlan
Published 2021-07-01

Combating subclonal evolution of resistant cancer phenotypes

by Samuel W. Brady, Jasmine A. McQuerry, Yi Qiao, Stephen R. Piccolo, Gajendra Shrestha, David F. Jenkins, Ryan M. Layer, Brent S. Pedersen, Ryan H. Miller, Amanda Esch, Sara R. Selitsky, Joel S. Parker, Layla A. Anderson, Brian K. Dalley, Rachel E. Factor, Chakravarthy B. Reddy, Jonathan P. Boltax, Dean Y. Li, Philip J. Moos, Joe W. Gray, Laura M. Heiser, Saundra S. Buys, Adam L. Cohen, W. Evan Johnson, Aaron R. Quinlan, Gabor Marth, Theresa L. Werner, Andrea H. Bild
Published 2017-11-01

Publisher Correction: Combating subclonal evolution of resistant cancer phenotypes

by Samuel W. Brady, Jasmine A. McQuerry, Yi Qiao, Stephen R. Piccolo, Gajendra Shrestha, David F. Jenkins, Ryan M. Layer, Brent S. Pedersen, Ryan H. Miller, Amanda Esch, Sara R. Selitsky, Joel S. Parker, Layla A. Anderson, Brian K. Dalley, Rachel E. Factor, Chakravarthy B. Reddy, Jonathan P. Boltax, Dean Y. Li, Philip J. Moos, Joe W. Gray, Laura M. Heiser, Saundra S. Buys, Adam L. Cohen, W. Evan Johnson, Aaron R. Quinlan, Gabor Marth, Theresa L. Werner, Andrea H. Bild
Published 2018-02-01