Gut microbiota-derived indole 3-propionic acid protects against radiation toxicity via retaining acyl-CoA-binding protein

by Hui-wen Xiao, Ming Cui, Yuan Li, Jia-li Dong, Shu-qin Zhang, Chang-chun Zhu, Mian Jiang, Tong Zhu, Bin Wang, Hai-Chao Wang, Sai-jun Fan
Published 2020-05-01

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia

by Juan E. Pérez-Jaramillo, Mattias de Hollander, Camilo A. Ramírez, Rodrigo Mendes, Jos M. Raaijmakers, Víctor J. Carrión
Published 2019-08-01

Reservoirs of antimicrobial resistance genes in retail raw milk

by Jinxin Liu, Yuanting Zhu, Michele Jay-Russell, Danielle G. Lemay, David A. Mills
Published 2020-06-01

Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteria

by Xingxing Jian, Yinghong Zhu, Jian Ouyang, Yihui Wang, Qian Lei, Jiliang Xia, Yongjun Guan, Jingyu Zhang, Jiaojiao Guo, Yanjuan He, Jinuo Wang, Jian Li, Jingchao Lin, Mingming Su, Guancheng Li, Minghua Wu, Lugui Qiu, Juanjuan Xiang, Lu Xie, Wei Jia, Wen Zhou
Published 2020-05-01

A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes

by Sheila Podell, Jessica M. Blanton, Aaron Oliver, Michelle A. Schorn, Vinayak Agarwal, Jason S. Biggs, Bradley S. Moore, Eric E. Allen
Published 2020-06-01

Adaptive matching between phyllosphere bacteria and their tree hosts in a neotropical forest

by Geneviève Lajoie, Rémi Maglione, Steven W. Kembel
Published 2020-05-01

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji

by Laura K. Boelsen, Eileen M. Dunne, Moana Mika, Stefanie Eggers, Cattram D. Nguyen, F. Tupou Ratu, Fiona M. Russell, E. Kim Mulholland, Markus Hilty, Catherine Satzke
Published 2019-07-01

Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms

by Haohui Zhong, Laura Lehtovirta-Morley, Jiwen Liu, Yanfen Zheng, Heyu Lin, Delei Song, Jonathan D. Todd, Jiwei Tian, Xiao-Hua Zhang
Published 2020-06-01

Changes of the human skin microbiota upon chronic exposure to polycyclic aromatic hydrocarbon pollutants

by Marcus H. Y. Leung, Xinzhao Tong, Philippe Bastien, Florent Guinot, Arthur Tenenhaus, Brice M. R. Appenzeller, Richard J. Betts, Sakina Mezzache, Jing Li, Nasrine Bourokba, Lionel Breton, Cécile Clavaud, Patrick K. H. Lee
Published 2020-06-01

Developing standards for the microbiome field

by Gregory C. A. Amos, Alastair Logan, Saba Anwar, Martin Fritzsche, Ryan Mate, Thomas Bleazard, Sjoerd Rijpkema
Published 2020-06-01

Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization

by Samuel T. Westreich, Amir Ardeshir, Zeynep Alkan, Mary E. Kable, Ian Korf, Danielle G. Lemay
Published 2019-03-01

A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis

by Hudan Pan, Ruijin Guo, Yanmei Ju, Qi Wang, Jie Zhu, Ying Xie, Yanfang Zheng, Ting Li, Zhongqiu Liu, Linlin Lu, Fei Li, Bin Tong, Liang Xiao, Xun Xu, Elaine Lai-Han Leung, Runze Li, Huanming Yang, Jian Wang, Hua Zhou, Huijue Jia, Liang Liu
Published 2019-07-01

Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing

by You Che, Yu Xia, Lei Liu, An-Dong Li, Yu Yang, Tong Zhang
Published 2019-03-01

Correction to: The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts

by Avihai Zolti, Stefan J. Green, Noa Sela, Yitzhak Hadar, Dror Minz
Published 2020-06-01

Fine-scale succession patterns and assembly mechanisms of bacterial community of Litopenaeus vannamei larvae across the developmental cycle

by Yanting Wang, Kai Wang, Lei Huang, Pengsheng Dong, Sipeng Wang, Heping Chen, Zheng Lu, Dandi Hou, Demin Zhang
Published 2020-07-01

Active eukaryotes in drinking water distribution systems of ground and surface waterworks

by Jenni Inkinen, Balamuralikrishna Jayaprakash, Sallamaari Siponen, Anna-Maria Hokajärvi, Anna Pursiainen, Jenni Ikonen, Ivan Ryzhikov, Martin Täubel, Ari Kauppinen, Jussi Paananen, Ilkka T. Miettinen, Eila Torvinen, Mikko Kolehmainen, Tarja Pitkänen
Published 2019-07-01

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study

by Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David R. W. Jayne, Andreas Kronbichler
Published 2019-10-01

Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids

by Shuai Wang, Rene Martins, Megan C. Sullivan, Elliot S. Friedman, Ana M. Misic, Ayah El-Fahmawi, Elaine Cristina Pereira De Martinis, Kevin O’Brien, Ying Chen, Charles Bradley, Grace Zhang, Alexander S. F. Berry, Christopher A. Hunter, Robert N. Baldassano, Mark P. Rondeau, Daniel P. Beiting
Published 2019-08-01

Contribution of gut microbiota to metabolism of dietary glycine betaine in mice and in vitro colonic fermentation

by Ville M. Koistinen, Olli Kärkkäinen, Klaudyna Borewicz, Iman Zarei, Jenna Jokkala, Valérie Micard, Natalia Rosa-Sibakov, Seppo Auriola, Anna-Marja Aura, Hauke Smidt, Kati Hanhineva
Published 2019-07-01

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

by Shashank Gupta, Mathis H. Hjelmsø, Jenni Lehtimäki, Xuanji Li, Martin S. Mortensen, Jakob Russel, Urvish Trivedi, Morten A. Rasmussen, Jakob Stokholm, Hans Bisgaard, Søren J. Sørensen
Published 2020-08-01