Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants

by Terhi Tapiainen, Pirjo Koivusaari, Lauren Brinkac, Hernan A. Lorenzi, Jarmo Salo, Marjo Renko, Hannele Pruikkonen, Tytti Pokka, Weizhong Li, Karen Nelson, Anna Maria Pirttilä, Mysore V. Tejesvi
Published 2019-07-01

Study of the impact of long-duration space missions at the International Space Station on the astronaut microbiome

by Alexander A. Voorhies, C. Mark Ott, Satish Mehta, Duane L. Pierson, Brian E. Crucian, Alan Feiveson, Cherie M. Oubre, Manolito Torralba, Kelvin Moncera, Yun Zhang, Eduardo Zurek, Hernan A. Lorenzi
Published 2019-07-01

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

by Thomas H. Clarke, Lauren M. Brinkac, Jason M. Inman, Granger Sutton, Derrick E. Fouts
Published 2018-06-01

Multiplexed Knockouts in the Model Diatom Phaeodactylum by Episomal Delivery of a Selectable Cas9

by Mark Andrew Moosburner, Mark Andrew Moosburner, Pardis Gholami, James K. McCarthy, Maxine Tan, Maxine Tan, Vincent A. Bielinski, Andrew E. Allen, Andrew E. Allen
Published 2020-01-01

OMeta: an ontology-based, data-driven metadata tracking system

by Indresh Singh, Mehmet Kuscuoglu, Derek M. Harkins, Granger Sutton, Derrick E. Fouts, Karen E. Nelson
Published 2019-01-01

Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis

by Larissa Pessoa, Gajender Aleti, Saibyasachi Choudhury, Daniel Nguyen, Tina Yaskell, Yun Zhang, Weizhong Li, Karen E. Nelson, Karen E. Nelson, Leopoldo Luiz Santos Neto, Adriana C. P. Sant'Ana, Marcelo Freire
Published 2019-11-01

Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-based DNA Delivery Methods

by Rachel E Diner, Rachel E Diner, Vincent A Bielinski, Chris Dupont, Andrew E Allen, Andrew E Allen, Philip D Weyman
Published 2016-08-01

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

by Monika Gulia-Nuss, Andrew B. Nuss, Jason M. Meyer, Daniel E. Sonenshine, R. Michael Roe, Robert M. Waterhouse, David B. Sattelle, José de la Fuente, Jose M. Ribeiro, Karine Megy, Jyothi Thimmapuram, Jason R. Miller, Brian P. Walenz, Sergey Koren, Jessica B. Hostetler, Mathangi Thiagarajan, Vinita S. Joardar, Linda I. Hannick, Shelby Bidwell, Martin P. Hammond, Sarah Young, Qiandong Zeng, Jenica L. Abrudan, Francisca C. Almeida, Nieves Ayllón, Ketaki Bhide, Brooke W. Bissinger, Elena Bonzon-Kulichenko, Steven D. Buckingham, Daniel R. Caffrey, Melissa J. Caimano, Vincent Croset, Timothy Driscoll, Don Gilbert, Joseph J. Gillespie, Gloria I. Giraldo-Calderón, Jeffrey M. Grabowski, David Jiang, Sayed M. S. Khalil, Donghun Kim, Katherine M. Kocan, Juraj Koči, Richard J. Kuhn, Timothy J. Kurtti, Kristin Lees, Emma G. Lang, Ryan C. Kennedy, Hyeogsun Kwon, Rushika Perera, Yumin Qi, Justin D. Radolf, Joyce M. Sakamoto, Alejandro Sánchez-Gracia, Maiara S. Severo, Neal Silverman, Ladislav Šimo, Marta Tojo, Cristian Tornador, Janice P. Van Zee, Jesús Vázquez, Filipe G. Vieira, Margarita Villar, Adam R. Wespiser, Yunlong Yang, Jiwei Zhu, Peter Arensburger, Patricia V. Pietrantonio, Stephen C. Barker, Renfu Shao, Evgeny M. Zdobnov, Frank Hauser, Cornelis J. P. Grimmelikhuijzen, Yoonseong Park, Julio Rozas, Richard Benton, Joao H. F. Pedra, David R. Nelson, Maria F. Unger, Jose M. C. Tubio, Zhijian Tu, Hugh M. Robertson, Martin Shumway, Granger Sutton, Jennifer R. Wortman, Daniel Lawson, Stephen K. Wikel, Vishvanath M. Nene, Claire M. Fraser, Frank H. Collins, Bruce Birren, Karen E. Nelson, Elisabet Caler, Catherine A. Hill
Published 2016-02-01

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

by Eileen P Hamilton, Aurélie Kapusta, Piroska E Huvos, Shelby L Bidwell, Nikhat Zafar, Haibao Tang, Michalis Hadjithomas, Vivek Krishnakumar, Jonathan H Badger, Elisabet V Caler, Carsten Russ, Qiandong Zeng, Lin Fan, Joshua Z Levin, Terrance Shea, Sarah K Young, Ryan Hegarty, Riza Daza, Sharvari Gujja, Jennifer R Wortman, Bruce W Birren, Chad Nusbaum, Jainy Thomas, Clayton M Carey, Ellen J Pritham, Cédric Feschotte, Tomoko Noto, Kazufumi Mochizuki, Romeo Papazyan, Sean D Taverna, Paul H Dear, Donna M Cassidy-Hanley, Jie Xiong, Wei Miao, Eduardo Orias, Robert S Coyne
Published 2016-11-01

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a...

by Granger G. Sutton, Lauren M. Brinkac, Thomas H. Clarke, Derrick E. Fouts
Published 2018-06-01

Functional Expression of Dental Plaque Microbiota

by Scott Norman Peterson, Scott Norman Peterson, Tobias eMeissner, Andrew I Su, Erik eSnesrud, Ana C Ong, Nicholas J Schork, Nicholas J Schork, Walter A Bretz
Published 2014-08-01

Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom

by Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C. Traller, Sarah R. Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A. Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V. Grigoriev, Andrew E. Allen, David Hazlebeck, Eric E. Allen
Published 2021-08-01

Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway

by Jernej Turnšek, John K Brunson, Maria del Pilar Martinez Viedma, Thomas J Deerinck, Aleš Horák, Miroslav Oborník, Vincent A Bielinski, Andrew Ellis Allen
Published 2021-02-01

Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment

by Harinder Singh, Satoshi Miyamoto, Manjula Darshi, Manolito G. Torralba, Keehwan Kwon, Kumar Sharma, Rembert Pieper
Published 2020-09-01

<i>Actinobaculum massiliense</i> Proteome Profiled in Polymicrobial Urethral Catheter Biofilms

by Yanbao Yu, Tamara Tsitrin, Harinder Singh, Sebastian N. Doerfert, Maria V. Sizova, Slava S. Epstein, Rembert Pieper
Published 2018-12-01

Rescue of Infectious Sindbis Virus by Yeast Spheroplast-Mammalian Cell Fusion

by Lin Ding, David M. Brown, John I. Glass
Published 2021-04-01

Protein and Microbial Biomarkers in Sputum Discern Acute and Latent Tuberculosis in Investigation of Pastoral Ethiopian Cohort

by Milkessa HaileMariam, Yanbao Yu, Harinder Singh, Takele Teklu, Takele Teklu, Biniam Wondale, Biniam Wondale, Adane Worku, Aboma Zewude, Stephanie Mounaud, Tamara Tsitrin, Mengistu Legesse, Ameni Gobena, Rembert Pieper
Published 2021-06-01

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

by Benjamin Lacar, Sara B. Linker, Baptiste N. Jaeger, Suguna Rani Krishnaswami, Jerika J. Barron, Martijn J. E. Kelder, Sarah L. Parylak, Apuã C. M. Paquola, Pratap Venepally, Mark Novotny, Carolyn O'Connor, Conor Fitzpatrick, Jennifer A. Erwin, Jonathan Y. Hsu, David Husband, Michael J. McConnell, Roger Lasken, Fred H. Gage
Published 2016-04-01

Epidemiology and Sequence-Based Evolutionary Analysis of Circulating Non-Polio Enteroviruses

by David M. Brown, Yun Zhang, Richard H. Scheuermann
Published 2020-11-01

The contrasting phylodynamics of human influenza B viruses

by Dhanasekaran Vijaykrishna, Edward C Holmes, Udayan Joseph, Mathieu Fourment, Yvonne CF Su, Rebecca Halpin, Raphael TC Lee, Yi-Mo Deng, Vithiagaran Gunalan, Xudong Lin, Timothy B Stockwell, Nadia B Fedorova, Bin Zhou, Natalie Spirason, Denise Kühnert, Veronika Bošková, Tanja Stadler, Anna-Maria Costa, Dominic E Dwyer, Q Sue Huang, Lance C Jennings, William Rawlinson, Sheena G Sullivan, Aeron C Hurt, Sebastian Maurer-Stroh, David E Wentworth, Gavin JD Smith, Ian G Barr
Published 2015-01-01