Highly efficient hypothesis testing methods for regression-type tests with correlated observations and heterogeneous variance structure

by Yun Zhang, Gautam Bandyopadhyay, David J. Topham, Ann R. Falsey, Xing Qiu
Published 2019-04-01

The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

by Camilla Urbaniak, Hernan Lorenzi, James Thissen, Crystal Jaing, Brian Crucian, Clarence Sams, Duane Pierson, Kasthuri Venkateswaran, Satish Mehta
Published 2020-04-01

Hepatitis B Virus X Protein Promotes Degradation of SMC5/6 to Enhance HBV Replication

by Christopher M. Murphy, Yanping Xu, Feng Li, Kouki Nio, Natalia Reszka-Blanco, Xiaodong Li, Yaxu Wu, Yanbao Yu, Yue Xiong, Lishan Su
Published 2016-09-01

Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas

by Alexandra R. Buckley, Trey Ideker, Hannah Carter, Olivier Harismendy, Nicholas J. Schork
Published 2018-09-01

Phenotypic and genotypic drug sensitivity of Mycobacterium tuberculosis complex isolated from South Omo Zone, Southern Ethiopia

by Wondale B, Medhin G, Abebe G, Tolosa S, Mohammed T, Teklu T, Pieper R, Ameni G
Published 2018-09-01

Development of a Bacteriophage Cocktail to Constrain the Emergence of Phage-Resistant Pseudomonas aeruginosa

by Yuhui Yang, Wei Shen, Qiu Zhong, Qian Chen, Xuesong He, Jonathon L. Baker, Kun Xiong, Xiaoling Jin, Jing Wang, Fuquan Hu, Shuai Le
Published 2020-03-01

Genetic Diversity of Mycobacterium tuberculosis Complex Isolated from Tuberculosis Patients in Bahir Dar City and Its Surroundings, Northwest Ethiopia

by Anwar Nuru, Gezahegne Mamo, Adane Worku, Aschalew Admasu, Girmay Medhin, Rembert Pieper, Gobena Ameni
Published 2015-01-01

Retroviruses As Myeloid Cell Riders: What Natural Human Siglec-1 “Knockouts” Tell Us About Pathogenesis

by Javier Martinez-Picado, Javier Martinez-Picado, Javier Martinez-Picado, Paul J. McLaren, Paul J. McLaren, Amalio Telenti, Nuria Izquierdo-Useros
Published 2017-11-01

Recombination does not hinder formation or detection of ecological species of Synechococcus inhabiting a hot spring cyanobacterial mat

by Melanie Crystal Melendrez, Eric Daniel Becraft, Jason M Wood, Millie T Olsen, Donald A Bryant, John F Heidelberg, Douglas B Rusch, Frederick M. Cohan, David M Ward
Published 2016-01-01

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

by Patrick D. Schloss, Matthew L. Jenior, Charles C. Koumpouras, Sarah L. Westcott, Sarah K. Highlander
Published 2016-03-01

The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mush...

by Eric Daniel Becraft, Eric Daniel Becraft, Jason M. Wood, Douglas B Rusch, Michael eKühl, Michael eKühl, Sheila I Jensen, Sheila I Jensen, Donald A Bryant, Donald A Bryant, Dave W Roberts, Frederick Michael Cohan, David M. Ward
Published 2015-06-01

Hybrid assembly with long and short reads improves discovery of gene family expansions

by Jason R. Miller, Peng Zhou, Joann Mudge, James Gurtowski, Hayan Lee, Thiruvarangan Ramaraj, Brian P. Walenz, Junqi Liu, Robert M. Stupar, Roxanne Denny, Li Song, Namrata Singh, Lyza G. Maron, Susan R. McCouch, W. Richard McCombie, Michael C. Schatz, Peter Tiffin, Nevin D. Young, Kevin A. T. Silverstein
Published 2017-07-01

A Comparison of Molecular Typing Methods Applied to Enterobacter cloacae complex: hsp60 Sequencing, Rep-PCR, and MLST

by Roberto Viau, Lee M. Kiedrowski, Barry N. Kreiswirth, Mark Adams, Federico Perez, Dror Marchaim, Dubert M. Guerrero, Keith S. Kaye, Latania K. Logan, Maria Virginia Villegas, Robert A. Bonomo
Published 2017-02-01

Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σE-regulated SPI-2 gene expression

by Jie eLi, Christopher eOverall, Ernesto Satoshi Nakayasu, Afshan eKidwai, Marcus eJones, Rudd eJohnson, Nhu eNguyen, Jason eMcDermott, Charles eAnsong, Fred eHeffron, Eric D. Cambronne, Joshua N. Adkins
Published 2015-02-01

Comprehensive analysis of treatment response phenotypes in rheumatoid arthritis for pharmacogenetic studies

by Kristopher A. Standish, C. Chris Huang, Mark E. Curran, Nicholas J. Schork
Published 2017-05-01

Spotted cotton oligonucleotide microarrays for gene expression analysis

by Udall, Joshua, Flagel, Lex, Cheung, Foo, Woodward, Andrew, Hovav, Ran, Rapp, Ryan, Swanson, Jordan, Lee, Jinsuk, Gingle, Alan, Nettleton, Dan, Town, Christopher, Chen, Z. J., Wendel, Jonathan
Published 2007

Transcriptional Analysis of <i>Coccidioides immitis</i> Mycelia and Spherules by RNA Sequencing

by Aaron F. Carlin, Sinem Beyhan, Jesús F. Peña, Jason E. Stajich, Suganya Viriyakosol, Joshua Fierer, Theo N. Kirkland
Published 2021-05-01

Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps

by Benjamin R. Gilbert, Zane R. Thornburg, Vinson Lam, Fatema-Zahra M. Rashid, Fatema-Zahra M. Rashid, John I. Glass, Elizabeth Villa, Remus T. Dame, Remus T. Dame, Zaida Luthey-Schulten
Published 2021-07-01

High-Resolution Mapping of Transcription Initiation in the Asexual Stages of Toxoplasma gondii

by Benedikt M. Markus, Benedikt M. Markus, Benjamin S. Waldman, Benjamin S. Waldman, Hernan A. Lorenzi, Sebastian Lourido, Sebastian Lourido
Published 2021-01-01

Specific Immunologic Countermeasure Protocol for Deep-Space Exploration Missions

by George Makedonas, Satish Mehta, Alexander Choukèr, Richard J. Simpson, Richard J. Simpson, Richard J. Simpson, Gailen Marshall, Jordan S. Orange, Serena Aunon-Chancellor, Scott M. Smith, Sara R. Zwart, Raymond P. Stowe, Martina Heer, Sergey Ponomarev, Alexandra Whitmire, Jean P. Frippiat, Grace L. Douglas, Stephanie S. Krieger, Hernan Lorenzi, Judith-Irina Buchheim, Geoffrey S. Ginsburg, C. Mark Ott, Meghan Downs, Duane Pierson, Natalie Baecker, Clarence Sams, Brian Crucian
Published 2019-10-01