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Showing 41 - 60 results of 77 for search '"BLOSUM"', query time: 0.35s Refine Results
  1. 41
    Mapping the Geometric Evolution of Protein Folding Motor.
    “... sequences. We have employed BLOSUM62 and PAM30 as standard for primary evaluation. Generation...”
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    Article
  2. 42
    Using Bioinformatics for Product Management System.
    by Liang-Chiu Wei, 魏良曲
    Published 2006
    “...（BLAST） and Block substitution matrix（BLOSUM） to set up the gene administrative system structure...”
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  3. 43
    A Study of Mobile Phone Green Service Parts Management System
    by San-hsin Wang, 王三信
    Published 2007
    “... Basic local alignment search tool (BLAST) as well as transposed matrix Block substitution matrix (BLOSUM...”
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  4. 44
    BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
    by Gribaldo Simonetta, Criscuolo Alexis
    Published 2010-07-01
    “.... Calculation of these entropy-like scores is weighted with BLOSUM or PAM similarity matrices in order...”
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    Article
  5. 45
    Identification of Lycopene epsilon cyclase (LCYE) gene mutants to potentially increase β-carotene content in durum wheat (Triticum turgidum L.ssp. durum) through TILLING.
    “... mutant individuals. LCYE mutants were then sequenced and evaluated with BLOSUM62, SIFT and PSSM...”
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    Article
  6. 46
    Four novel mutations in the lactase gene (<it>LCT</it>) underlying congenital lactase deficiency (CLD)
    “..., Blosum62, PolyPhen, SIFT and Panther PSEC were used.</p> <p>Results</p> <p>Four novel mutations...”
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    Article
  7. 47
    IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments
    “... phylogenetic tree and distance matrix, respectively, using neighbor joining% identity and BLOSUM 62 matrix....”
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    Article
  8. 48
    A deep learning method to more accurately recall known lysine acetylation sites
    by Meiqi Wu, Yingxi Yang, Hui Wang, Yan Xu
    Published 2019-01-01
    “..., including a one-hot, BLOSUM62 matrix, a composition of K-space amino acid pairs, information gain...”
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    Article
  9. 49
    Derivation of an amino acid similarity matrix for peptide:MHC binding and its application as a Bayesian prior
    “... BLOSUM62, this matrix captures well-known physicochemical properties of amino acid residues. However...”
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    Article
  10. 50
    Computational identification of strain-, species- and genus-specific proteins
    “... but is not the best hit. Sequences unlikely to retrieve homologs using the default BLOSUM62 matrix (usually short...”
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    Article
  11. 51
    An SVM-based system for predicting protein subnuclear localizations
    by Dai Yang, Lei Zhengdeng
    Published 2005-12-01
    “... are measured by BLOSUM62 scores. The kernels, measuring the similarity for sequences, are then defined...”
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    Article
  12. 52
    SPHot: Prediction of Hot Spots in Protein-RNA Complexes by Protein Sequence Information and Ensemble Classifier
    by Sijia Zhang, Le Zhao, Junfeng Xia
    Published 2019-01-01
    “... substitution matrix (BLOSUM62), and the predicted relative accessible surface area. Based on these sequence...”
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    Article
  13. 53
    Distributed Representation of Protein Sequence Based on Multi-Alignment Results
    by Siqi Wang, Liu He, Shi Cheng, Xiaohu Shi
    Published 2020-01-01
    “... embedding vectors with that derived from BLOSUM62; it was found that their Pearson coefficient is 0.937...”
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    Article
  14. 54
    Identificación de población de riesgo para alergia a la leche de vaca
    “... programa CLUSTAL OMEGA, the Neighbor-Joining, BLOSUM62, con los datos estudiados y grabados por Jukes...”
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    Article
  15. 55
    Peptide-Major Histocompatibility Complex Class I Binding Prediction Based on Deep Learning With Novel Feature
    by Tianyi Zhao, Liang Cheng, Tianyi Zang, Yang Hu
    Published 2019-11-01
    “... the previous studies which are based on blocks substitution matrix (BLOSUM), we used novel feature to do...”
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    Article
  16. 56
    Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes.
    “... Database (IEDB). Their similarity to microbiome sequences was calculated using the BLOSUM62 matrix. We...”
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    Article
  17. 57
    OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
    “... the PAM250 pair-score matrix was replaced by a BLOSUM series matrix. AMPS gave an accuracy in Structurally...”
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    Article
  18. 58
    <it>Scoredist</it>: A simple and robust protein sequence distance estimator
    by Hollich Volker, Sonnhammer Erik LL
    Published 2005-04-01
    “... divergence based on the alignment score according to the BLOSUM62 score matrix. We evaluated <it>Scoredist...”
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    Article
  19. 59
    SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment
    by Scott Barlowe, Heather B. Coan, Robert T. Youker
    Published 2017-06-01
    “... are often grouped together in families. For example, the BLOSUM and PAM matrix families are commonly used...”
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    Article
  20. 60
    MDD-Palm: Identification of protein S-palmitoylation sites with substrate motifs based on maximal dependence decomposition.
    “... matrix (BLOSUM62), and accessible surface area (ASA) were considered, along with the effectiveness...”
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    Article
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