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21“...-derived descriptor classes are the Blosum indices, Cruciani properties, FASGAI vectors, Kidera factors...”
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22“... on 10 physicochemical properties of 20 amino acids and the BLOSUM62 matrix. It contains evolutionary...”
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23“... such as MEGA6 program, BLOSUM62 matrix program and BioEdit software). All these data will be used in future...”
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24by Chan Philip A“..., and average BLOSUM62 pairwise score. Two common polymorphisms, H43Y and R136Q, were predicted to be benign...”
Published 2008-11-01
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25“... properties upon the substitution matrices. We also characterize and compare the PAM and BLOSUM series...”
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27“... with zebrafish, rainbow trout, human, mouse and platyfish lcp1/Lcp1 was calculated using BLOSUM62 matrix...”
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28“... model allows us to explain up to 94% of the variability in the BLOSUM family of the amino acids...”
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29“... the computational models with combinations of amino acid pair composition and BLOSUM62 matrix of proteins. According...”
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30“... with zebrafish, rainbow trout, human, mouse and platyfish lcp1/Lcp1 was calculated using BLOSUM62 matrix...”
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31“... that structurally similar residues coincide with those found in substitution matrices such as BLOSUM: Asn ↔ Asp, Phe...”
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32“... feature in a histone model. We combined BLOSUM62 and AAPC features in a nonhistone model. Furthermore...”
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33“.... Since commonly used BLOSUM or PAM matrices for scoring amino acid matches have been optimized to be used...”
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34“... very simple scoring scheme (BLOSUM62 and affine gap penalty) is implemented and merely the threshold...”
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35by Edgar Robert C“... benchmarks, with VTML200 giving best or close to the best performance in all tests. BLOSUM matrices are found...”
Published 2009-12-01
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36“... and then uses a traditional multiple sequence alignment tool CLUSTAL W and a new BLOSUM-like scoring matrix...”
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37“... BLOSUM62 dissimilar compensatory mutations. Therefore, it is a helpful tool to predict and investigate...”
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38“... alphabet, returns more hits than that of using BLOSUM62. We anticipate that the results further reveal...”
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39“... amino acids into different groups based on specified BLOSUM/PAM series of matrices. Traditional...”
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40“... sequence with Arabidopsis; severity of the mutation relative to Chlamydomonas wild-type based on Blosum62...”
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