greenCUT&RUN: Efficient Genomic Profiling of GFP-Tagged Transcription Factors and Chromatin Regulators

by Koidl, S., Timmers, H.T.M
Published 2021

Chromatin Immunoprecipitation and Sequencing (ChIP-seq) Optimized for Application in Caenorhabditis elegans

by Kavšek, A., Riedel, C.G, Sen, I.
Published 2021

Comprehensive analysis of the correlations of S100B with hypoxia response and immune infiltration in hepatocellular carcinoma

by Huang, Q.Y, Huang, Y.J, Liu, P.X, Wang, C.S, Yan, J.
Published 2022

Predicting genotype-specific gene regulatory networks

by Glass, K., Guebila, M.B, Platig, J., Quackenbush, J., Weighill, D.
Published 2022

Spatial and Genomic Correlates of HIV-1 Integration Site Targeting

by Bedwell, G.J, Engelman, A.N, Singh, P.K
Published 2022

Constructing gene regulatory networks using epigenetic data

by DeMeo, D.L, Glass, K., Quackenbush, J., Sonawane, A.R
Published 2021

CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes

by Boeva, V., Esposito, M., Gregoricchio, S., Guillouf, C., Kerdivel, G., Polit, L.
Published 2021

Increased peak detection accuracy in over-dispersed ChIP-seq data with supervised segmentation models

by Hocking, T.D, Liehrmann, A., Rigaill, G.
Published 2021

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

by Chen, X., Clarke, R., Hilakivi-Clarke, L., Neuwald, A.F, Shi, X., Xuan, J.
Published 2021

WACS: improving ChIP-seq peak calling by optimally weighting controls

by Awdeh, A., Perkins, T.J, Turcotte, M.
Published 2021

HIF activation enhances FcγRIIb expression on mononuclear phagocytes impeding tumor targeting antibody immunotherapy

by Beers, S.A, Booth, S.G, Carter, M.J, Chee, S.J, Cleary, K.L.S, Cragg, M.S, Cutress, R.I, Dahal, L.N, Douglas, J., Foxall, R.B, French, R.R, Frendéus, B., Ghorbani, M., Glennie, M.J, Hargreaves, C.E, Hussain, K., James, S., Kemp, R.S, Liu, R., Longley, J., Macari, S., Markham, H., Müller, K.T.J, Murray, T., Oldham, R.J, Ottensmeier, C.H, Roghanian, A., Smith, R.C.G, Stopforth, R.J, Strefford, J.C, Thirdborough, S.M
Published 2022

Alkaline nucleoplasm facilitates contractile gene expression in the mammalian heart

by Andreev, O.A, Carr, C.A, Chung, Y.J, Crump, N.T, Curtis, M.K, Fournier, M., Gunadasa-Rohling, M., Hulikova, A., Loonat, A.A, Milne, T.A, Moshnikova, A., Park, K.C, Reshetnyak, Y.K, Riley, P.R, Smart, N., Swietach, P., Trafford, A.W, Wilson, A.
Published 2022

MUC1-C integrates type II interferon and chromatin remodeling pathways in immunosuppression of prostate cancer

by Bhattacharya, A., Fushimi, A., Hagiwara, M., Hu, Q., Kufe, D., Liu, S., Liu, T., Long, M.D, Morimoto, Y., Oya, M., Withers, H.G, Wong, K.K, Yamashita, N.
Published 2022

Cleavage-Mediated Regulation of Myd88 Signaling by Inflammasome-Activated Caspase-1

by Avbelj, M., Gole, B., Hafner-Bratkovič, I., Jerala, R., Lainšček, D., Manček-Keber, M., Panter, G., Peternelj, T.T, Potočnik, U., Treon, S.P
Published 2022