The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

by Abdennur, N., Alver, B.H, Bakker, C., Balashov, A.K, Çamoğlu, U., Cosolo, A., Ehmsen, S.R, Gehlenborg, N., Imakaev, M., Johnson, J., Kerpedjiev, P., Kırlı, K., Lee, S., Mirny, L.A, Öztürk, S.U, Park, P.J, Pitman, K.M, Reiff, S.B, Ronchetti, W., Schroeder, A.J, Veit, A.D, Vitzthum, C.
Published 2022

High-quality chromosome-scale de novo assembly of the Paspalum notatum ‘Flugge’ genome

by Chen, Y., Cong, L., Gong, Y., Liu, H., Ma, L., Miao, F., Song, H., Sun, J., Wang, A., Wang, Q., Wang, Z., Yan, Z., Yang, G., Yin, X.
Published 2022

A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome

by Jiumjamrassil, D., Kongkachana, W., Maknual, C., Naktang, C., Phetchawang, P., Pootakham, W., Pravinvongvuthi, T., Sonthirod, C., Tangphatsornruang, S., U-Thoomporn, S.
Published 2022

New resources for the Drosophila 4th chromosome: FRT101F enabled mitotic clones and Bloom syndrome helicase enabled meiotic recombination

by Daly, S.M, Goldsmith, S.L, Newfeld, S.J, O'Connor, M.B, Shimell, M., Shimmi, O., Tauscher, P.
Published 2022

Transgenic tools for targeted chromosome rearrangements allow construction of balancer chromosomes in non-melanogaster Drosophila species

by Stern, D.L
Published 2022

Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron

by Fu, Z., Jiang, D., Tong, S., Wang, M., Zhang, L.
Published 2022

c-Abl kinase-mediated phosphorylation of γ-tubulin promotes γ-tubulin ring complexes assembly and microtubule nucleation

by Bai, Y., Cao, C., Dong, Q., Gu, J., Jin, Y., Liu, H., Liu, X., Niu, X., Song, C., Tao, Q., Wang, D., Wang, G.-F, Yue, J., Zheng, T., Zhou, R., Zhu, L.
Published 2022

RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes

by Alves-Pereira, C.F, Bortvin, A., Gimelbrant, A.A, Gupta, S., Igarashi, K.J, Lafontaine, D.L, Mendelevich, A., Nag, A., Vigneau, S., Vinogradova, S.
Published 2022

The economy of chromosomal distances in bacterial gene regulation

by Cakir, E., Hütt, M.-T, Lesne, A.
Published 2021

MCKAT: a multi-dimensional copy number variant kernel association test

by Catchpoole, D., Kennedy, P.J, Khan, J., Maus Esfahani, N.
Published 2021

Efficient iterative Hi-C scaffolder based on N-best neighbors

by Durbin, R., Guan, D., McCarthy, S.A, Ning, Z., Wang, G., Wang, Y.
Published 2021

Modeling stem cell nucleus mechanics using confocal microscopy

by Fitzpatrick, C.K, Goelzer, M., Judex, S., Kennedy, Z., Newberg, J., Uzer, G.
Published 2021

Chemical map-based prediction of nucleosome positioning using the Bioconductor package nuCpos

by Kato, H., Shimizu, M., Urano, T.
Published 2021

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms

by Derzelle, A., Flot, J.-F, Guiglielmoni, N., Houtain, A., Van Doninck, K.
Published 2021

A tri-tuple coordinate system derived for fast and accurate analysis of the colored de Bruijn graph-based pangenomes

by Guo, J., Lin, K., Pang, E., Song, H.
Published 2021

Deciphering hierarchical organization of topologically associated domains through change-point testing

by Chen, Y., Wu, Y., Xing, H., Zhang, M.Q
Published 2021

WALTER: an easy way to online evaluate telomere lengths from terminal restriction fragment analysis

by Demko, M., Fajkus, J., Fojtová, M., Kilar, A., Lyčka, M., Peska, V., Spyroglou, I.
Published 2021

ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data

by Delwart, E., Deng, Z.
Published 2021

Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

by Chen, H., Lu, D., Lu, Y., Xu, S.
Published 2021

Pattern recognition in lymphoid malignancies using CytoGPS and Mercator

by Abrams, Z.B, Abruzzo, L.V, Coombes, C.E, Coombes, K.R, Payne, P.R.O, Tally, D.G, Zhang, L.
Published 2021