EGFAFS: A Novel Feature Selection Algorithm Based on Explosion Gravitation Field Algorithm

Feature selection (FS) is a vital step in data mining and machine learning, especially for analyzing the data in high-dimensional feature space. Gene expression data usually consist of a few samples characterized by high-dimensional feature space. As a result, they are not suitable to be processed b...

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Bibliographic Details
Main Authors: Fu, Y. (Author), Hu, X. (Author), Huang, L. (Author), Wang, Y. (Author)
Format: Article
Language:English
Published: MDPI 2022
Subjects:
Online Access:View Fulltext in Publisher
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008 220718s2022 CNT 000 0 und d
020 |a 10994300 (ISSN) 
245 1 0 |a EGFAFS: A Novel Feature Selection Algorithm Based on Explosion Gravitation Field Algorithm 
260 0 |b MDPI  |c 2022 
856 |z View Fulltext in Publisher  |u https://doi.org/10.3390/e24070873 
520 3 |a Feature selection (FS) is a vital step in data mining and machine learning, especially for analyzing the data in high-dimensional feature space. Gene expression data usually consist of a few samples characterized by high-dimensional feature space. As a result, they are not suitable to be processed by simple methods, such as the filter-based method. In this study, we propose a novel feature selection algorithm based on the Explosion Gravitation Field Algorithm, called EGFAFS. To reduce the dimensions of the feature space to acceptable dimensions, we constructed a recommended feature pool by a series of Random Forests based on the Gini index. Furthermore, by paying more attention to the features in the recommended feature pool, we can find the best subset more efficiently. To verify the performance of EGFAFS for FS, we tested EGFAFS on eight gene expression datasets compared with four heuristic-based FS methods (GA, PSO, SA, and DE) and four other FS methods (Boruta, HSICLasso, DNN-FS, and EGSG). The results show that EGFAFS has better performance for FS on gene expression data in terms of evaluation metrics, having more than the other eight FS algorithms. The genes selected by EGFAGS play an essential role in the differential co-expression network and some biological functions further demonstrate the success of EGFAFS for solving FS problems on gene expression data. © 2022 by the authors. Licensee MDPI, Basel, Switzerland. 
650 0 4 |a Explosion Gravitation Field Algorithm 
650 0 4 |a feature selection 
650 0 4 |a gene expression data 
650 0 4 |a heuristic algorithm 
700 1 |a Fu, Y.  |e author 
700 1 |a Hu, X.  |e author 
700 1 |a Huang, L.  |e author 
700 1 |a Wang, Y.  |e author 
773 |t Entropy