Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes

• Main Authors: Rutkowski, D.M (Author), Vavylonis, D. (Author)
• Format: Article
• Language: English
• Published: Public Library of Science 2021
• Subjects: actin; Actin Cytoskeleton; actin filament; Actins; Article; biological model; biology; cell adhesion; Cell Adhesion; cell motion; Cell Movement; chemistry; Computational Biology; computer simulation; cytochalasin D; cytoplasm; focal adhesion; Focal Adhesions; lamellipodium; mathematical model; metabolism; Models, Biological; molecular motor; physiology; polymerization; protein cross linking; protein interaction; protein structure; Pseudopodia; pseudopodium
• Online Access: View Fulltext in Publisher

 Mechanical forces, actin filament turnover, and adhesion to the extracellular environment regulate lamellipodial protrusions. Computational and mathematical models at the continuum level have been used to investigate the molecular clutch mechanism, calculating the stress profile through the lamellipodium and around focal adhesions. However, the forces and deformations of individual actin filaments have not been considered while interactions between actin networks and actin bundles is not easily accounted with such methods. We develop a filament-level model of a lamellipodial actin network undergoing retrograde flow using 3D Brownian dynamics. Retrograde flow is promoted in simulations by pushing forces from the leading edge (due to actin polymerization), pulling forces (due to molecular motors), and opposed by viscous drag in cytoplasm and focal adhesions. Simulated networks have densities similar to measurements in prior electron micrographs. Connectivity between individual actin segments is maintained by permanent and dynamic crosslinkers. Remodeling of the network occurs via the addition of single actin filaments near the leading edge and via filament bond severing. We investigated how several parameters affect the stress distribution, network deformation and retrograde flow speed. The model captures the decrease in retrograde flow upon increase of focal adhesion strength. The stress profile changes from compression to extension across the leading edge, with regions of filament bending around focal adhesions. The model reproduces the observed reduction in retrograde flow speed upon exposure to cytochalasin D, which halts actin polymerization. Changes in crosslinker concentration and dynamics, as well as in the orientation pattern of newly added filaments demonstrate the model’s ability to generate bundles of filaments perpendicular (actin arcs) or parallel (microspikes) to the protruding direction. Copyright: © 2021 Rutkowski, Vavylonis. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.