Applications of Fluorinated Aryl Boronates in Organic Synthesis

• Main Author: Budiman, Yudha Prawira
• Format: Doctoral Thesis
• Language: English
• Published: 2020
• Subjects: ddc:546
• Online Access: https://opus.bibliothek.uni-wuerzburg.de/frontdoor/index/index/docId/21757; http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-217579; https://nbn-resolving.org/urn:nbn:de:bvb:20-opus-217579; https://doi.org/10.25972/OPUS-21757; https://opus.bibliothek.uni-wuerzburg.de/files/21757/Doctoral_Thesis_Yudha__Prawira_Budiman.pdf

Fluorinated compounds are an important motif, particularly in pharmaceuticals, as one-third of the top performing drugs have fluorine in their structures. Fluorinated biaryls also have numerous applications in areas such as material science, agriculture, crystal engineering, supramolecular chemistry, etc. Thus, the development of new synthetic routes to fluorinated chemical compounds is an important area of current research. One promising method is the borylation of suitable precursors to generate fluorinated aryl boronates as versatile building blocks for organic synthesis. Chapter 1 In this chapter, the latest developments in the synthesis, stability issues, and applications of fluorinated aryl boronates in organic synthesis are reviewed. The catalytic synthesis of fluorinated aryl boronates using different methods, such as C–H, C–F, and C–X (X = Cl, Br, I, OTf) borylations are discussed. Further studies covering instability issues of the fluorinated boronate derivatives, which are accelerated by ortho-fluorine, have been reported, and the applications of these substrates, therefore, need special treatment. Numerous groups have reported methods to employ highly fluorinated aryl boronates that anticipate the protodeboronation issue; thus, polyfluorinated aryl boronates, especially those containing ortho-fluorine substituents, can be converted into chloride, bromide, iodide, phenol, carboxylic acid, nitro, cyano, methyl esters, and aldehyde analogues. These substrates can be applied in many cross-coupling reactions, such as the Suzuki-Miyaura reaction with aryl halides, the Chan-Evans-Lam C–N reaction with aryl amines or nitrosoarenes, C–C(O) reactions with N-(aryl-carbonyloxy)phthalamides or thiol esters (Liebskind-Srogl cross-coupling), and oxidative coupling reactions with terminal alkynes. Furthermore, the difficult reductive elimination from the highly stable complex [PdL2(2,6-C6F2+nH3-n)2] was the next challenge to be targeted in the homocoupling of 2,6-di-fluoro aryl pinacol boronates, and it has been solved by conducting the reaction in arene solvents that reduce the energy barrier in this step as long as no coordinating solvent or ancillary ligand is employed. Chapter 2 In this chapter, phenanthroline-ligated copper complexes proved to be efficient catalysts for the Suzuki-Miyaura cross-coupling of highly fluorinated aryl boronate esters (ArF–Bpin) with aryl iodides or bromides. This newly developed method is an attractive alternative to the traditional methods as copper is an Earth-abundant metal, less toxic, and cheaper compared to the traditional methods which commonly required palladium catalysts, and silver oxide that is also often required in stoichiometric amounts. A combination of 10 mol% copper iodide and 10 mol% phenanthroline, with CsF as a base, in DMF, at 130 ˚C, for 18 hours is efficient to cross-couple fluorinated aryl pinacol boronates with aryl iodides to generate cross-coupled products in good to excellent yields. This method is also viable for polyfluorophenyl borate salts such as pentafluorophenyl-BF3K. Notably, employing aryl bromides instead of aryl iodides for the coupling with fluorinated aryl–Bpin compounds is also possible; however, increased amounts of CuI/phenanthroline catalyst is necessary, in a mixture of DMF and toluene (1:1). A diverse range of π···π stacking interactions is observed in the cross-coupling products partly perfluorinated biaryl crystals. They range from arene–perfluoroarene interactions (2-(perfluorophenyl)naphthalene and 2,3,4-trifluorobiphenyl) to arene–arene (9-perfluorophenyl)anthracene) and perfluoroarene–perfluoroarene (2,3,4,5,6-pentafluoro-2’methylbiphenyl) interactions. Chapter 3 In this chapter, the efficient Pd-catalyzed homocoupling reaction of aryl pinacol pinacol boronates (ArF–Bpin) that contain two ortho-fluorines is presented. The reaction must be conducted in a “noncoordinating” solvent such as toluene, benzene, or m-xylene and, notably, stronger coordinating solvents or ancillary ligands have to be avoided. Thus, the Pd center becomes more electron deficient and the reductive elimination becomes more favorable. The Pd-catalyzed homocoupling reaction of di-ortho-fluorinated aryl boronate derivatives is difficult in strongly coordinating solvents or in the presence of strong ancillary ligands, as the reaction stops at the [PdL2(2,6-C6F2+nH3-n)2] stage after the transmetalations without the reductive elimination taking place. It is known that the rate of reductive elimination of Ar–Ar from [ML2(Ar)(Ar)] complexes containing group-10 metals decreases in the order Arrich–Arpoor > Arrich–Arrich > Arpoor–Arpoor. Furthermore, reductive elimination of the most electron-poor diaryls, such as C6F5–C6F5, from [PdL2(C6F5)2] complexes is difficult and has been a challenge for 50 years, due to their high stability as the Pd–Caryl bond is strong. Thus, the Pd-catalyzed homocoupling of perfluoro phenyl boronates is found to be rather difficult.   Further investigation showed that stoichiometric reactions of C6F5Bpin, 2,4,6-trifluorophenyl–Bpin, or 2,6-difluorophenyl–Bpin with palladium acetate in MeCN stops at the double transmetalation step, as demonstrated by the isolation of cis-[Pd(MeCN)2(C6F5)2], cis-[Pd(MeCN)2(2,4,6-C6F3H2)2], and cis-[Pd(MeCN)2(2,6-C6F2H3)2] in quantitative yields. Thus, it can be concluded that the reductive elimination from diaryl-palladium complexes containing two ortho-fluorines in both aryl rings, is difficult even in a weakly coordinating solvent such as MeCN. Therefore, even less coordinating solvents are needed to make the Pd center more electron deficient. Reactions using “noncoordinating” arene solvents such as toluene, benzene, or m-xylene were conducted and found to be effective for the catalytic homocoupling of 2,6-C6F2+nH3-nBpin. The scope of the reactions was expanded. Using toluene as the solvent, the palladium-catalyzed homocoupling of ArF–Bpin derivatives containing one, two or no ortho-fluorines gave the coupled products in excellent yields without any difficulties. DFT calculations at the B3LYP-D3/def2-TZVP/6-311+g(2d,p)/IEFPCM // B3LYP-D3/SDD/6-31g**/IEFPCM level of theory predicted an exergonic process and lower barrier (< 21 kcal/mol) for the reductive elimination of Pd(C6F5)2 complexes bearing arene ligands, compared to stronger coordinating solvents (acetonitrile, THF, SMe2, and PMe3), which have high barriers ( > 33.7 kcal/mol). Reductive elimination from [Pd(ηn-Ar)(C6F5)2] complexes have low barriers due to: (i) ring slippage of the arene ligand as a hapticity change from η6 in the reactant to ηn (n ≤ 3) in the transition state and the product, which led to less σ-repulsion; and (ii) more favorable π-back-bonding from Pd(ArF)2 to the arene fragment in the transition state. Chapter 4 In this chapter, the efficient Pd-catalyzed C–Cl borylation of aryl chlorides containing two ortho-fluorines is presented. The reactions are conducted under base-free conditions to prevent the decomposition of the di-ortho-fluorinated aryl boronates, which are unstable in the presence of base. A combination of Pd(dba)2 (dba = dibenzylideneacetone) with SPhos (2-dicyclohexylphosphino-2′,6′-dimethoxybiphenyl) as a ligand is efficient to catalyze the C–Cl borylation of aryl chlorides containing two ortho-fluorine substituents without base, and the products were isolated in excellent yields. The substrate scope can be expanded to aryl chloride containing one or no ortho-fluorines and the borylated products were isolated in good to very good yield. This method provides a nice alternative to traditional methodologies using lithium or Grignard reagents. === Fluorierte Verbindungen sind insbesondere in der Pharmazie wichtige Bausteine, da ein Drittel der wirksamen Medikamente Fluorsubstituenten beinhalten. Fluorierte Biaryle haben auch zahlreiche Anwendungen in Bereichen wie der Materialwissenschaft, der Landwirtschaft, dem Design molekularer Festkörperstrukturen, der supramolekularen Chemie etc. Daher ist die Entwicklung neuer synthetischer Wege zu fluorierten chemischen Verbindungen sehr gefragt. Eine der vielversprechenden Methoden ist die Borylierung geeigneter Vorstufen zur Erzeugung fluorierter Arylboronate, die als vielseitige Bausteine für die organische Synthese dienen können. ...