| Summary: | Coral reef degradation is happening at an alarming rate all over the world due to multiple stressors with elevated sea surface temperature being the root cause. Using the Regional Ocean Modelling System and an individual-based model for the western Indian Ocean, this thesis explored the general circulation patterns (both large and mesoscale) important to dispersal and connectivity of broadcast corals while identifying regions that act as a source of larvae and those that receive larvae. Because habitat destruction and fragmentation through severe bleaching and mortality threaten coral reef health, projected thermal stress from Global Climate Models was explored to quantify future bleaching scenarios that might impact the reproductive timing and larval dispersal. Evaluation of the ROMS configuration for the western Indian Ocean shows that the basin-scale circulation patterns of the region are appropriately captured with the mean volume transports consistent with those derived from observation. Using the eddy detection algorithm, a description of the Southern Gyre as a key aspect of the Somali Current system was identified. The Southern Gyre is associated with barotropic instabilities associated with the northward flowing Somali Current. Rossby waves arriving at the East African coast and the strength of the monsoon winds are also responsible for the evolution and intensification of the gyre. The aggregated trajectories from the Lagrangian model highlight the dominant dispersal pathways and barriers to dispersal following release. The general circulation plays an important role in the dispersal of reef larvae over the study region. At a short pelagic larval duration, most of the released larvae settle back to or near natal reefs, but as the pelagic duration increases, the number of isolated reefs and islands decreases. Even with increased pelagic duration, some reefs (e.g., Agalega and Tromelin) are completely isolated. The mean dispersal distance from release to settlement varied across the region with larvae released along the East African coast dispersed an average of 405 km before settling while those in the Seychelles archipelago dispersed about 101 km. Different blocks of clusters were observed with 16 clusters observed when the pelagic duration is shorter (5 days), compared to seven clusters when the pelagic duration is longer (60 days). The warming trends and bleaching thermal stress shows that among the 636 reef pixels in the study region, about 56% showed positive sea surface temperature trends during the study period (1985- 2016). The frequency of bleaching level thermal stress has also increased over the same period, a tendency that climate models project to continue. Even under optimistic scenarios (such as the Representative Concentration Pathway RCP 4.5), most coral reefs are projected to experience severe bleaching and possible mortality by the 2050s. Low to moderate thermal stress are projected over reefs along the East African coast and near the northwest tip of Madagascar and thus these regions may act as potential climate refugia while increasing the potential of reefs to cope with climate change.
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