Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State

Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State

Escherichia coli is commensal bacteria and is a symbiont of the digestive system of vertebrates. Due to frequent deposition of E. coli into extrahost habitats (soil, water), approximately half of its population exists as free living organisms. It is unclear what genome-wide variation stands behind a...

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Main Author: Maistrenko, Oleksandr
Format: Others
Published: North Dakota State University 2018
Subjects:
Botany.
Online Access:https://hdl.handle.net/10365/28022
id ndltd-ndsu.edu-oai-library.ndsu.edu-10365-28022
record_format oai_dc
spelling ndltd-ndsu.edu-oai-library.ndsu.edu-10365-280222021-09-28T17:11:56Z Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State Maistrenko, Oleksandr Botany. Escherichia coli is commensal bacteria and is a symbiont of the digestive system of vertebrates. Due to frequent deposition of E. coli into extrahost habitats (soil, water), approximately half of its population exists as free living organisms. It is unclear what genome-wide variation stands behind adaptation for extrahost habitat. This thesis applies a genome-wide association study approach to find genetic variation in core and accessory parts of genome of E. coli that is associated with 1) forest or agricultural field soil habitats and 2) with survival phenotype in soil microcosm. Gene composition analysis suggests that pan-genome of environmental E. coli is unlimited. Core and accessory genome contained variation associated with survival phenotype and with forest or field habitat. Federal Formula Funding (Hatch-Act) ND-EPSCoR Fulbright-STEP scholarship 2018-04-24T18:05:53Z 2018-04-24T18:05:53Z 2016 text/thesis https://hdl.handle.net/10365/28022 NDSU policy 190.6.2 https://www.ndsu.edu/fileadmin/policy/190.pdf application/pdf North Dakota State University
collection NDLTD
format Others
sources NDLTD
topic Botany.
spellingShingle Botany.
Maistrenko, Oleksandr
Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State
description Escherichia coli is commensal bacteria and is a symbiont of the digestive system of vertebrates. Due to frequent deposition of E. coli into extrahost habitats (soil, water), approximately half of its population exists as free living organisms. It is unclear what genome-wide variation stands behind adaptation for extrahost habitat. This thesis applies a genome-wide association study approach to find genetic variation in core and accessory parts of genome of E. coli that is associated with 1) forest or agricultural field soil habitats and 2) with survival phenotype in soil microcosm. Gene composition analysis suggests that pan-genome of environmental E. coli is unlimited. Core and accessory genome contained variation associated with survival phenotype and with forest or field habitat. === Federal Formula Funding (Hatch-Act) === ND-EPSCoR === Fulbright-STEP scholarship
author Maistrenko, Oleksandr
author_facet Maistrenko, Oleksandr
author_sort Maistrenko, Oleksandr
title Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State
title_short Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State
title_full Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State
title_fullStr Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State
title_full_unstemmed Variation in Core and Accessory Parts of Genome of Escherichia Coli Isolated from Soil from Riparian Areas in New York State
title_sort variation in core and accessory parts of genome of escherichia coli isolated from soil from riparian areas in new york state
publisher North Dakota State University
publishDate 2018
url https://hdl.handle.net/10365/28022
work_keys_str_mv AT maistrenkooleksandr variationincoreandaccessorypartsofgenomeofescherichiacoliisolatedfromsoilfromriparianareasinnewyorkstate
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