Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules
Quantum chemical methods to predict experimental chiroptical properties by solving the time-dependent Schrödinger equation are useful in the assignment of absolute configurations. Chiroptical properties, being very sensitive to the electronic structure of the system, require highly-accurate methods...
Main Author: | |
---|---|
Other Authors: | |
Format: | Others |
Published: |
Virginia Tech
2021
|
Subjects: | |
Online Access: | http://hdl.handle.net/10919/104677 |
id |
ndltd-VTETD-oai-vtechworks.lib.vt.edu-10919-104677 |
---|---|
record_format |
oai_dc |
collection |
NDLTD |
format |
Others
|
sources |
NDLTD |
topic |
molecular properties coupled cluster theory reduced scaling |
spellingShingle |
molecular properties coupled cluster theory reduced scaling Dcunha, Ruhee Lancelot Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules |
description |
Quantum chemical methods to predict experimental chiroptical properties by solving the time-dependent Schrödinger equation are useful in the assignment of absolute configurations. Chiroptical properties, being very sensitive to the electronic structure of the system, require highly-accurate methods on the one hand and on the other, need to be able to be computed with limited computational resources.
The calculation of the optical rotation in the solution phase is complicated by solvent effects. In order to capture those solvent effects, we present a study that uses conformational averaging and time-dependent density functional theory calculations that incorporate solvent molecules explicitly in the quantum mechanical region. While considering several controllable parameters along which the system's optical rotation varies, we find that the sampling of the dynamical trajectory and the density functional chosen have the largest impact on the value of the rotation.
In order to eliminate the arbitrariness of the choice of density functional, we would prefer to use coupled cluster theory, a robust and systematically improvable method. However, the high-order polynomial scaling of coupled cluster theory makes it intractable for numerous large calculations, including the conformational averaging required for optical rotation calculations in solution. We therefore attempt to reduce the scaling of a linear response coupled cluster singles and doubles (LR-CCSD) calculation via a perturbed pair natural orbital (PNO++) local correlation approach which uses an orbital space created using a perturbed density matrix. We find that by creating a "combined PNO++" space, incorporating a set of orbitals from the unperturbed pair natural orbital (PNO) space into the PNO++ space, we can obtain well-behaved convergence behavior for both CCSD correlation energies and linear response properties, including dynamic polarizabilities and optical rotations, for the small systems considered.
The PNO++ and combined PNO++ methods require aggressive truncation to keep the computational cost low, due to an expensive two-electron integral transformation at the beginning of the calculation. We apply the methods to larger systems than previously studied and refine them for more aggressive truncation by exploring an alternative form of the perturbed density and a perturbation-including weak pair approximation. === Doctor of Philosophy === Theoretical chemistry attempts to provide connections between the structure of molecules and their observable properties. One such family of observables are chiroptical properties, or the effect of the medium on the light which passes through it. These properties include the scattering, absorption and change in polarization of light. Light being classically an electromagnetic field, chiroptical properties can be derived by treating molecules quantum mechanically and the light classically. The prediction of chiroptical properties on computers using the principles of quantum mechanics is still a growing field, being very sensitive to the method used, and requiring considerations of factors such as conformations and anharmonic corrections.
Matching experimental properties is an important step in the creation of a reliable method of predicting properties of systems in order to provide more information than can be obtained through experimental observation. This work begins by addressing the problem of matching experimentally obtained quantities. Our results show that current time-intensive methods still fall short in the matching of experimental data. Thus, we then move on to approximating a more robust but computationally expensive method in order to be able to use a more accurate method on a larger scale than is currently possible. On obtaining positive results for small test systems, we test the new method on larger systems, and explore possible improvements to its accuracy and efficiency. |
author2 |
Chemistry |
author_facet |
Chemistry Dcunha, Ruhee Lancelot |
author |
Dcunha, Ruhee Lancelot |
author_sort |
Dcunha, Ruhee Lancelot |
title |
Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules |
title_short |
Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules |
title_full |
Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules |
title_fullStr |
Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules |
title_full_unstemmed |
Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules |
title_sort |
towards an improved method for the prediction of linear response properties of small organic molecules |
publisher |
Virginia Tech |
publishDate |
2021 |
url |
http://hdl.handle.net/10919/104677 |
work_keys_str_mv |
AT dcunharuheelancelot towardsanimprovedmethodforthepredictionoflinearresponsepropertiesofsmallorganicmolecules |
_version_ |
1723964634553122816 |
spelling |
ndltd-VTETD-oai-vtechworks.lib.vt.edu-10919-1046772021-12-15T05:57:32Z Towards an Improved Method for the Prediction of Linear Response Properties of Small Organic Molecules Dcunha, Ruhee Lancelot Chemistry Crawford, T. Daniel Mayhall, Nicholas Troya, Diego Embree, Mark Partick molecular properties coupled cluster theory reduced scaling Quantum chemical methods to predict experimental chiroptical properties by solving the time-dependent Schrödinger equation are useful in the assignment of absolute configurations. Chiroptical properties, being very sensitive to the electronic structure of the system, require highly-accurate methods on the one hand and on the other, need to be able to be computed with limited computational resources. The calculation of the optical rotation in the solution phase is complicated by solvent effects. In order to capture those solvent effects, we present a study that uses conformational averaging and time-dependent density functional theory calculations that incorporate solvent molecules explicitly in the quantum mechanical region. While considering several controllable parameters along which the system's optical rotation varies, we find that the sampling of the dynamical trajectory and the density functional chosen have the largest impact on the value of the rotation. In order to eliminate the arbitrariness of the choice of density functional, we would prefer to use coupled cluster theory, a robust and systematically improvable method. However, the high-order polynomial scaling of coupled cluster theory makes it intractable for numerous large calculations, including the conformational averaging required for optical rotation calculations in solution. We therefore attempt to reduce the scaling of a linear response coupled cluster singles and doubles (LR-CCSD) calculation via a perturbed pair natural orbital (PNO++) local correlation approach which uses an orbital space created using a perturbed density matrix. We find that by creating a "combined PNO++" space, incorporating a set of orbitals from the unperturbed pair natural orbital (PNO) space into the PNO++ space, we can obtain well-behaved convergence behavior for both CCSD correlation energies and linear response properties, including dynamic polarizabilities and optical rotations, for the small systems considered. The PNO++ and combined PNO++ methods require aggressive truncation to keep the computational cost low, due to an expensive two-electron integral transformation at the beginning of the calculation. We apply the methods to larger systems than previously studied and refine them for more aggressive truncation by exploring an alternative form of the perturbed density and a perturbation-including weak pair approximation. Doctor of Philosophy Theoretical chemistry attempts to provide connections between the structure of molecules and their observable properties. One such family of observables are chiroptical properties, or the effect of the medium on the light which passes through it. These properties include the scattering, absorption and change in polarization of light. Light being classically an electromagnetic field, chiroptical properties can be derived by treating molecules quantum mechanically and the light classically. The prediction of chiroptical properties on computers using the principles of quantum mechanics is still a growing field, being very sensitive to the method used, and requiring considerations of factors such as conformations and anharmonic corrections. Matching experimental properties is an important step in the creation of a reliable method of predicting properties of systems in order to provide more information than can be obtained through experimental observation. This work begins by addressing the problem of matching experimentally obtained quantities. Our results show that current time-intensive methods still fall short in the matching of experimental data. Thus, we then move on to approximating a more robust but computationally expensive method in order to be able to use a more accurate method on a larger scale than is currently possible. On obtaining positive results for small test systems, we test the new method on larger systems, and explore possible improvements to its accuracy and efficiency. 2021-08-19T08:00:18Z 2021-08-19T08:00:18Z 2021-08-18 Dissertation vt_gsexam:32231 http://hdl.handle.net/10919/104677 In Copyright http://rightsstatements.org/vocab/InC/1.0/ ETD application/pdf application/pdf Virginia Tech |