Kubernetes as an approach for solving bioinformatic problems.

Kubernetes as an approach for solving bioinformatic problems.

The cluster orchestration tool Kubernetes enables easy deployment and reproducibility of life science research by utilizing the advantages of the container technology. The container technology allows for easy tool creation, sharing and runs on any Linux system once it has been built. The applicabili...

Full description

Bibliographic Details
Main Author: Markstedt, Olof
Format: Others
Language:English
Published: Uppsala universitet, Institutionen för biologisk grundutbildning 2017
Subjects:
Bioinformatics and Systems Biology
Bioinformatik och systembiologi
Online Access:http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-330217
id ndltd-UPSALLA1-oai-DiVA.org-uu-330217
record_format oai_dc
spelling ndltd-UPSALLA1-oai-DiVA.org-uu-3302172017-10-18T05:21:35ZKubernetes as an approach for solving bioinformatic problems.engMarkstedt, OlofUppsala universitet, Institutionen för biologisk grundutbildning2017Bioinformatics and Systems BiologyBioinformatik och systembiologiThe cluster orchestration tool Kubernetes enables easy deployment and reproducibility of life science research by utilizing the advantages of the container technology. The container technology allows for easy tool creation, sharing and runs on any Linux system once it has been built. The applicability of Kubernetes as an approach to run bioinformatic workflows was evaluated and resulted in some examples of how Kubernetes and containers could be used within the field of life science and how they should not be used. The resulting examples serves as proof of concepts and the general idea of how implementation is done. Kubernetes allows for easy resource management and includes automatic scheduling of workloads. It scales rapidly and has some interesting components that are beneficial when conducting life science research. Student thesisinfo:eu-repo/semantics/bachelorThesistexthttp://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-330217UPTEC X ; 17 020application/pdfinfo:eu-repo/semantics/openAccess
collection NDLTD
language English
format Others
sources NDLTD
topic Bioinformatics and Systems Biology
Bioinformatik och systembiologi
spellingShingle Bioinformatics and Systems Biology
Bioinformatik och systembiologi
Markstedt, Olof
Kubernetes as an approach for solving bioinformatic problems.
description The cluster orchestration tool Kubernetes enables easy deployment and reproducibility of life science research by utilizing the advantages of the container technology. The container technology allows for easy tool creation, sharing and runs on any Linux system once it has been built. The applicability of Kubernetes as an approach to run bioinformatic workflows was evaluated and resulted in some examples of how Kubernetes and containers could be used within the field of life science and how they should not be used. The resulting examples serves as proof of concepts and the general idea of how implementation is done. Kubernetes allows for easy resource management and includes automatic scheduling of workloads. It scales rapidly and has some interesting components that are beneficial when conducting life science research.
author Markstedt, Olof
author_facet Markstedt, Olof
author_sort Markstedt, Olof
title Kubernetes as an approach for solving bioinformatic problems.
title_short Kubernetes as an approach for solving bioinformatic problems.
title_full Kubernetes as an approach for solving bioinformatic problems.
title_fullStr Kubernetes as an approach for solving bioinformatic problems.
title_full_unstemmed Kubernetes as an approach for solving bioinformatic problems.
title_sort kubernetes as an approach for solving bioinformatic problems.
publisher Uppsala universitet, Institutionen för biologisk grundutbildning
publishDate 2017
url http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-330217
work_keys_str_mv AT markstedtolof kubernetesasanapproachforsolvingbioinformaticproblems
_version_ 1718555894023716864

Similar Items