Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD

Water is “the matrix of life” for its fascinating properties. The well-known simple water molecule consists of one oxygen atom and two hydrogen atoms, covering most of planet earth’ssurface. It is the most studied element in science; however, its properties are still not fully understood. Another es...

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Bibliographic Details
Main Author: Yousif, Rafat
Format: Others
Language:English
Published: Stockholms universitet, Fysikum 2019
Subjects:
XRD
Online Access:http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-172513
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spelling ndltd-UPSALLA1-oai-DiVA.org-su-1725132019-09-03T05:27:01ZInvestigating the influence of water in lysozyme structure and dynamics using FT-IR and XRDengYousif, RafatStockholms universitet, Fysikum2019waterlysozymecrystalline watersupercooled waterhydrogen bondsFT-IRXRDhydration waterprotein foldingprotein dynamic transitionPhysical ChemistryFysikalisk kemiBiochemistry and Molecular BiologyBiokemi och molekylärbiologiWater is “the matrix of life” for its fascinating properties. The well-known simple water molecule consists of one oxygen atom and two hydrogen atoms, covering most of planet earth’ssurface. It is the most studied element in science; however, its properties are still not fully understood. Another essential building block of life is proteins, which manifest naturally in aqueous environments. The protein activity is controlled by the protein folding process that is dependent on the surrounding environment. It is hypothesized that the hydrogen bond network of water plays an important role in the folding process. Here, we investigate the protein lysozyme in liquid water as well as in the crystalline state ice Ih, exploring various temperatures, using FT-IR and XRD. Our main finding is that a transition occurs at approximately T=210 K, indicative of the hypothesised protein dynamic “glass” transitionobserved by previous studies in supercooled water at similar temperatures. Student thesisinfo:eu-repo/semantics/bachelorThesistexthttp://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-172513application/pdfinfo:eu-repo/semantics/openAccess
collection NDLTD
language English
format Others
sources NDLTD
topic water
lysozyme
crystalline water
supercooled water
hydrogen bonds
FT-IR
XRD
hydration water
protein folding
protein dynamic transition
Physical Chemistry
Fysikalisk kemi
Biochemistry and Molecular Biology
Biokemi och molekylärbiologi
spellingShingle water
lysozyme
crystalline water
supercooled water
hydrogen bonds
FT-IR
XRD
hydration water
protein folding
protein dynamic transition
Physical Chemistry
Fysikalisk kemi
Biochemistry and Molecular Biology
Biokemi och molekylärbiologi
Yousif, Rafat
Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD
description Water is “the matrix of life” for its fascinating properties. The well-known simple water molecule consists of one oxygen atom and two hydrogen atoms, covering most of planet earth’ssurface. It is the most studied element in science; however, its properties are still not fully understood. Another essential building block of life is proteins, which manifest naturally in aqueous environments. The protein activity is controlled by the protein folding process that is dependent on the surrounding environment. It is hypothesized that the hydrogen bond network of water plays an important role in the folding process. Here, we investigate the protein lysozyme in liquid water as well as in the crystalline state ice Ih, exploring various temperatures, using FT-IR and XRD. Our main finding is that a transition occurs at approximately T=210 K, indicative of the hypothesised protein dynamic “glass” transitionobserved by previous studies in supercooled water at similar temperatures.
author Yousif, Rafat
author_facet Yousif, Rafat
author_sort Yousif, Rafat
title Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD
title_short Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD
title_full Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD
title_fullStr Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD
title_full_unstemmed Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD
title_sort investigating the influence of water in lysozyme structure and dynamics using ft-ir and xrd
publisher Stockholms universitet, Fysikum
publishDate 2019
url http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-172513
work_keys_str_mv AT yousifrafat investigatingtheinfluenceofwaterinlysozymestructureanddynamicsusingftirandxrd
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