Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study
碩士 === 國立臺灣大學 === 流行病學與預防醫學研究所 === 100 === Background and Aims: Acute exacerbation (AE) occurs frequently in hepatitis B surface antigen (HBsAg) carriers, especially in those positive for HBeAg. During the course of persistent hepatitis B virus (HBV) infection, AE is likely related to the break of b...
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ndltd-TW-100NTU055440102015-10-13T21:45:45Z http://ndltd.ncl.edu.tw/handle/70013906293693893816 Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study B型肝炎病毒polymerase基因區變異與慢性B肝急性發作之相關:縱式研究 Pei-Yun Cheng 鄭佩芸 碩士 國立臺灣大學 流行病學與預防醫學研究所 100 Background and Aims: Acute exacerbation (AE) occurs frequently in hepatitis B surface antigen (HBsAg) carriers, especially in those positive for HBeAg. During the course of persistent hepatitis B virus (HBV) infection, AE is likely related to the break of balance between virus and host immune response, and HBV genetic variation may trigger AE. The aim of this study was to clarify the association between HBV sequence variations and AE, and to investigate change in Pol gene sequence before, during, and after exacerbation. Materials and Methods: We prospectively studied 52 patients with exacerbation of hepatitis B Pol gene sequence using plasma sample collected at baseline, before alanine aminotransferase (ALT) peak, ALT peak, and after ALT peak, respectively. Fifty-two subjects who h ad persistently normal serum ALT during follow-up served as controls. A total of 160 HBV DNA samples were amplified by nested polymerase chain reaction (PCR) from sera and were directly sequenced. We then analyze the relationship between HBV evolutionary pattern and specific nucleotide/amino acid variants and acute exacerbation. Results: AE cases had a significantly higher level of serum ALT and HBV DNA than controls at baseline. Baseline genetic distance was statistically lower in cases than in controls at the nucleotide level (9.68*10-3 vs. 11.7*10-3, p=0.031), but no such association was found at ALT peak (12.1*10-3 vs. 13.8*10-3, p=0.329). Among AE cases, the genetic distance was also higher at ALT peak when compare with other time points at marginal statistical significance (12.1*10-3 vs. 10.2 *10-3, p=0.071). After point-by-point screening the nucleotide/amino acid positions in the whole Pol gene region, we have revealed the association between AE and variant types at nucleotide and amino acid positions, nt1080 (OR 0.32, p 0.0288), nt1126 (OR 0.33, p 0.0453), nt1242 (OR 0.34, p 0.0346), nt2619 (OR 0.32, p 0.0433), nt2444 (OR 4.07, p 0.0157), aa17 (OR 0.28, p 0.048), aa46 (OR 4.28, p 0.0116) . Conclusion: Our data suggest no clear evidence for the association between rate of viral divergence and the occurrence of AE. Certain single nucleotide polymorphism may serve as predictive of AE. Ming-Whei Yu 于明暉 2012 學位論文 ; thesis 45 zh-TW |
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碩士 === 國立臺灣大學 === 流行病學與預防醫學研究所 === 100 === Background and Aims: Acute exacerbation (AE) occurs frequently in hepatitis B surface antigen (HBsAg) carriers, especially in those positive for HBeAg. During the course of persistent hepatitis B virus (HBV) infection, AE is likely related to the break of balance between virus and host immune response, and HBV genetic variation may trigger AE. The aim of this study was to clarify the association between HBV sequence variations and AE, and to investigate change in Pol gene sequence before, during, and after exacerbation.
Materials and Methods: We prospectively studied 52 patients with exacerbation of hepatitis B Pol gene sequence using plasma sample collected at baseline, before alanine aminotransferase (ALT) peak, ALT peak, and after ALT peak, respectively. Fifty-two subjects who h ad persistently normal serum ALT during follow-up served as controls. A total of 160 HBV DNA samples were amplified by nested polymerase chain reaction (PCR) from sera and were directly sequenced. We then analyze the relationship between HBV evolutionary pattern and specific nucleotide/amino acid variants and acute exacerbation.
Results: AE cases had a significantly higher level of serum ALT and HBV DNA than controls at baseline. Baseline genetic distance was statistically lower in cases than in controls at the nucleotide level (9.68*10-3 vs. 11.7*10-3, p=0.031), but no such association was found at ALT peak (12.1*10-3 vs. 13.8*10-3, p=0.329). Among AE cases, the genetic distance was also higher at ALT peak when compare with other time points at marginal statistical significance (12.1*10-3 vs. 10.2 *10-3, p=0.071). After point-by-point screening the nucleotide/amino acid positions in the whole Pol gene region, we have revealed the association between AE and variant types at nucleotide and amino acid positions, nt1080 (OR 0.32, p 0.0288), nt1126 (OR 0.33, p 0.0453), nt1242 (OR 0.34, p 0.0346), nt2619 (OR 0.32, p 0.0433), nt2444 (OR 4.07, p 0.0157), aa17 (OR 0.28, p 0.048), aa46 (OR 4.28, p 0.0116) .
Conclusion: Our data suggest no clear evidence for the association between rate of viral divergence and the occurrence of AE. Certain single nucleotide polymorphism may serve as predictive of AE.
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author2 |
Ming-Whei Yu |
author_facet |
Ming-Whei Yu Pei-Yun Cheng 鄭佩芸 |
author |
Pei-Yun Cheng 鄭佩芸 |
spellingShingle |
Pei-Yun Cheng 鄭佩芸 Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study |
author_sort |
Pei-Yun Cheng |
title |
Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study |
title_short |
Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study |
title_full |
Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study |
title_fullStr |
Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study |
title_full_unstemmed |
Viral Polymerase Genetic Variation and Acute Exacerbation in Chronic Hepatitis B: Longitudinal Study |
title_sort |
viral polymerase genetic variation and acute exacerbation in chronic hepatitis b: longitudinal study |
publishDate |
2012 |
url |
http://ndltd.ncl.edu.tw/handle/70013906293693893816 |
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