Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota.
碩士 === 國立中山大學 === 海洋生物研究所 === 99 === The encrusting sponge Terpios hoshinota is a cyanobacteriosponge with symbiotic photosynthetic cyanobacteria. It covers live corals causing their death. Corals at Green Island were suspected to be infected by Terpios hoshinota in 2006, and field investigations in...
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碩士 === 國立中山大學 === 海洋生物研究所 === 99 === The encrusting sponge Terpios hoshinota is a cyanobacteriosponge with symbiotic photosynthetic cyanobacteria. It covers live corals causing their death. Corals at Green Island were suspected to be infected by Terpios hoshinota in 2006, and field investigations indicated there was massive propagation of the species in both Green Island (Lyudao) and Orchid Island (Lanyu) in 2008 to 2010. We propose two hypotheses, either by Self-Seeding or by Long-Range Dispersal, that explain the fast propagation of Terpios hoshinota in the islands offshore of southeastern of Taiwan. We use ribosomal DNA and mitochondria DNA as molecular markers to investigate how the sponge disperses locally and in a greater geographic scale. A total of 110 samples, from Taiwan: Green Island, Orchid Island, and Kenting (Wanlitong). Japan: Okinawa, Nakijin, Miyako, Bise, Shiraho, Arahama Kumeshima, Yakomo (Okinoerabu), San (Takunoshima), and Xisha Island of China, were collected. Internal Transcribed Spacer 2 (ITS2) from ribosomal DNA and cytochrome oxidase I (COI) from mitochondria DNA are used as markers to infer population structure of Terpios hoshinota.
No genetic variation within COI sequence over all sponges from Taiwan to Japan and China was found, although the only sponge sample from Wanlitong in Kenting had three variable sites, which suggest different species of Terpios hoshinota. Based on ITS2 analysis, haplotype diversity (h) is commonly high among most populations, but with different single haplotype found at Green Island and Arahama (Japan). Pairwise population differentiations (FST) are usually high and significant among populations supporting self-seeding, although Bise, Shiraho and Lanyu populations showed no significant differentiation that supports long-range dispersal. Analysis of Molecular Variance (AMOVA) shows no population subdivision; however, genetic differentiations among populations are significantly greater than within populations. TCS analysis indicates that single haplotype in Green Island is originated from Lanyu, and populations in Bise are widely dispersed over other sponge populations in Taiwan and Japan regions. By evidence of TCS analysis with nucleotide diversity, haplotype diversity and field investigation, Bise is the origin of Terpios hoshinota among populations within this study. Frequency of sequence haplotypes indicates one dominant haplotype is shared among most of the sponge populations, and the dominated sponge haplotype takes highest proportions of local populations. The existence of dominant haplotype may result from better dispersal or reproduction ability than other haplotype in populations. Nested clade analysis shows that populations mainly have restricted gene flow with some clade have contiguous range expansion.
We suggest that populations of Terpios hoshinota propagate mainly by self-seeding method with occasional long-range dispersal event that leading to genetic connection among populations and obscuring evidence of isolation by distance in these populations. In Green Island, we consider local populations as undergoing explosion within past several years and propagate by self-seeding method coming from single lineage of Lanyu. Populations in Lanyu may come from Bise, Shiraho, and Yakomo, yet may still in status of population explosion. Populations in Japan may underwent founder effect with rapid population growth, while most populations are rarely interact with each other showing deep genetic differentiation among islands, and Bise is the origin of Terpios hoshinota in this study. Not all of the sponge individuals have ability to dominate local populations, expect for one special haplotype of Terpios hoshinota is capable of dominating local population in both range and quantity, which also has capability of spreading across islands as larger distances than its habitats range in Taiwan and Japan.
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author2 |
Keryea Soong |
author_facet |
Keryea Soong Wen-hua Chou 周文華 |
author |
Wen-hua Chou 周文華 |
spellingShingle |
Wen-hua Chou 周文華 Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. |
author_sort |
Wen-hua Chou |
title |
Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. |
title_short |
Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. |
title_full |
Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. |
title_fullStr |
Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. |
title_full_unstemmed |
Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. |
title_sort |
outbreak mechanisms of black disease: genetic connectivity and dispersal mechanisms of terpios hoshinota. |
publishDate |
2011 |
url |
http://ndltd.ncl.edu.tw/handle/80144489291677305871 |
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ndltd-TW-099NSYS52700342015-10-19T04:03:19Z http://ndltd.ncl.edu.tw/handle/80144489291677305871 Outbreak mechanisms of Black disease: genetic connectivity and dispersal mechanisms of Terpios hoshinota. 黑皮海綿生物學與珊瑚黑病爆發機制: 太平洋黑皮海綿遺傳連通性與擴散機制研究 Wen-hua Chou 周文華 碩士 國立中山大學 海洋生物研究所 99 The encrusting sponge Terpios hoshinota is a cyanobacteriosponge with symbiotic photosynthetic cyanobacteria. It covers live corals causing their death. Corals at Green Island were suspected to be infected by Terpios hoshinota in 2006, and field investigations indicated there was massive propagation of the species in both Green Island (Lyudao) and Orchid Island (Lanyu) in 2008 to 2010. We propose two hypotheses, either by Self-Seeding or by Long-Range Dispersal, that explain the fast propagation of Terpios hoshinota in the islands offshore of southeastern of Taiwan. We use ribosomal DNA and mitochondria DNA as molecular markers to investigate how the sponge disperses locally and in a greater geographic scale. A total of 110 samples, from Taiwan: Green Island, Orchid Island, and Kenting (Wanlitong). Japan: Okinawa, Nakijin, Miyako, Bise, Shiraho, Arahama Kumeshima, Yakomo (Okinoerabu), San (Takunoshima), and Xisha Island of China, were collected. Internal Transcribed Spacer 2 (ITS2) from ribosomal DNA and cytochrome oxidase I (COI) from mitochondria DNA are used as markers to infer population structure of Terpios hoshinota. No genetic variation within COI sequence over all sponges from Taiwan to Japan and China was found, although the only sponge sample from Wanlitong in Kenting had three variable sites, which suggest different species of Terpios hoshinota. Based on ITS2 analysis, haplotype diversity (h) is commonly high among most populations, but with different single haplotype found at Green Island and Arahama (Japan). Pairwise population differentiations (FST) are usually high and significant among populations supporting self-seeding, although Bise, Shiraho and Lanyu populations showed no significant differentiation that supports long-range dispersal. Analysis of Molecular Variance (AMOVA) shows no population subdivision; however, genetic differentiations among populations are significantly greater than within populations. TCS analysis indicates that single haplotype in Green Island is originated from Lanyu, and populations in Bise are widely dispersed over other sponge populations in Taiwan and Japan regions. By evidence of TCS analysis with nucleotide diversity, haplotype diversity and field investigation, Bise is the origin of Terpios hoshinota among populations within this study. Frequency of sequence haplotypes indicates one dominant haplotype is shared among most of the sponge populations, and the dominated sponge haplotype takes highest proportions of local populations. The existence of dominant haplotype may result from better dispersal or reproduction ability than other haplotype in populations. Nested clade analysis shows that populations mainly have restricted gene flow with some clade have contiguous range expansion. We suggest that populations of Terpios hoshinota propagate mainly by self-seeding method with occasional long-range dispersal event that leading to genetic connection among populations and obscuring evidence of isolation by distance in these populations. In Green Island, we consider local populations as undergoing explosion within past several years and propagate by self-seeding method coming from single lineage of Lanyu. Populations in Lanyu may come from Bise, Shiraho, and Yakomo, yet may still in status of population explosion. Populations in Japan may underwent founder effect with rapid population growth, while most populations are rarely interact with each other showing deep genetic differentiation among islands, and Bise is the origin of Terpios hoshinota in this study. Not all of the sponge individuals have ability to dominate local populations, expect for one special haplotype of Terpios hoshinota is capable of dominating local population in both range and quantity, which also has capability of spreading across islands as larger distances than its habitats range in Taiwan and Japan. Keryea Soong 宋克義 2011 學位論文 ; thesis 87 en_US |