To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function

碩士 === 國立成功大學 === 生物化學研究所 === 97 === Infertility affects 15% of all couples. Deleted in Azoospermia (DAZ) gene was isolated from the AZFc region of the human Y chromosome that is frequently deleted in infertile men. DAZ-like (DAZL) is an autosomal homolog located on chromosome 3p24. In human beings,...

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Main Authors: Ting-yen Chen, 陳亭燕
Other Authors: Pao-link Kuo
Format: Others
Language:zh-TW
Published: 2009
Online Access:http://ndltd.ncl.edu.tw/handle/82815723884764812966
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spelling ndltd-TW-097NCKU51070142016-05-04T04:25:27Z http://ndltd.ncl.edu.tw/handle/82815723884764812966 To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function 尋找DAZL調控的下游基因並探討其單一核苷酸多型性對DAZL之功能影響 Ting-yen Chen 陳亭燕 碩士 國立成功大學 生物化學研究所 97 Infertility affects 15% of all couples. Deleted in Azoospermia (DAZ) gene was isolated from the AZFc region of the human Y chromosome that is frequently deleted in infertile men. DAZ-like (DAZL) is an autosomal homolog located on chromosome 3p24. In human beings, DAZL expresses in germ cells with different developmental stages, from spermatogonia, meiotic spermatocytes to mature spermatozoa. Although DAZL is essential for spermatogenesis, the exact function remains undefined. It has been proposed that DAZL binds with mRNA expressed in germ cells and control spermatogenesis at the level of translation. However, specific target mRNAs regulated by DAZL in vivo are not clear. Using RNA immunoprecipitation combined with high-throughput sequence analysis, a number of target transcripts, including NUDT21, NUP50, KLHL12, KDELR1, VAPA, ABHD2, SUPT5H, MLL3 and ATP6AP2, were identified. Among these transcripts the regulation of NUDT21, one of the CFIm subunit, by DAZL was studies. NUDT21 are highly expressed in mouse male germ cells and involve in alternative polyadenylation directed by noncanonical poly(A) signals during spermatogenesis. Previously, we have identified several mutations and single nucleotide polymorphisms (SNP) of DAZL, which associated with spermatogenic failure. To characterize the functional role of DAZL polymorphisms or mutations, RNA-IP and S6-IP were used to examine the binding activity and translational efficiency of NUDT21, respectively. The binding activity was increased while the translational efficiency was decreased in the existence of normal DAZL. In contrast, the polymorphism of DAZL, A to G transition at nucleotide 386, was associated with decreased binding activity and increased translational efficiency for NUDT21. These data support NUDT21 as a candidate target of DAZL-mediated translation and suggest that DAZL may indirectly participate in alternative polyadenylation during spermatogenesis. Pao-link Kuo Joseph T. Tseng 郭保麟 曾大千 2009 學位論文 ; thesis 66 zh-TW
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description 碩士 === 國立成功大學 === 生物化學研究所 === 97 === Infertility affects 15% of all couples. Deleted in Azoospermia (DAZ) gene was isolated from the AZFc region of the human Y chromosome that is frequently deleted in infertile men. DAZ-like (DAZL) is an autosomal homolog located on chromosome 3p24. In human beings, DAZL expresses in germ cells with different developmental stages, from spermatogonia, meiotic spermatocytes to mature spermatozoa. Although DAZL is essential for spermatogenesis, the exact function remains undefined. It has been proposed that DAZL binds with mRNA expressed in germ cells and control spermatogenesis at the level of translation. However, specific target mRNAs regulated by DAZL in vivo are not clear. Using RNA immunoprecipitation combined with high-throughput sequence analysis, a number of target transcripts, including NUDT21, NUP50, KLHL12, KDELR1, VAPA, ABHD2, SUPT5H, MLL3 and ATP6AP2, were identified. Among these transcripts the regulation of NUDT21, one of the CFIm subunit, by DAZL was studies. NUDT21 are highly expressed in mouse male germ cells and involve in alternative polyadenylation directed by noncanonical poly(A) signals during spermatogenesis. Previously, we have identified several mutations and single nucleotide polymorphisms (SNP) of DAZL, which associated with spermatogenic failure. To characterize the functional role of DAZL polymorphisms or mutations, RNA-IP and S6-IP were used to examine the binding activity and translational efficiency of NUDT21, respectively. The binding activity was increased while the translational efficiency was decreased in the existence of normal DAZL. In contrast, the polymorphism of DAZL, A to G transition at nucleotide 386, was associated with decreased binding activity and increased translational efficiency for NUDT21. These data support NUDT21 as a candidate target of DAZL-mediated translation and suggest that DAZL may indirectly participate in alternative polyadenylation during spermatogenesis.
author2 Pao-link Kuo
author_facet Pao-link Kuo
Ting-yen Chen
陳亭燕
author Ting-yen Chen
陳亭燕
spellingShingle Ting-yen Chen
陳亭燕
To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function
author_sort Ting-yen Chen
title To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function
title_short To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function
title_full To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function
title_fullStr To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function
title_full_unstemmed To identify the target RNAs regulated by DAZL and characterize the effect of Single-Nucleotide Polymorphism on DAZL’s function
title_sort to identify the target rnas regulated by dazl and characterize the effect of single-nucleotide polymorphism on dazl’s function
publishDate 2009
url http://ndltd.ncl.edu.tw/handle/82815723884764812966
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