Analysis of word-order universals using Bayesian phylogenetic inference

Thesis (M. Eng.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2012. === Cataloged from PDF version of thesis. === Includes bibliographical references (p. 65-66). === This thesis examines the novel approach by Dunn et al. (2011) that employs the Bayesi...

Full description

Bibliographic Details
Main Author: Ho, Pangus
Other Authors: Robert C. Berwick.
Format: Others
Language:English
Published: Massachusetts Institute of Technology 2013
Subjects:
Online Access:http://hdl.handle.net/1721.1/77015
id ndltd-MIT-oai-dspace.mit.edu-1721.1-77015
record_format oai_dc
spelling ndltd-MIT-oai-dspace.mit.edu-1721.1-770152019-05-02T15:45:30Z Analysis of word-order universals using Bayesian phylogenetic inference Ho, Pangus Robert C. Berwick. Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science. Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science. Electrical Engineering and Computer Science. Thesis (M. Eng.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2012. Cataloged from PDF version of thesis. Includes bibliographical references (p. 65-66). This thesis examines the novel approach by Dunn et al. (2011) that employs the Bayesian phylogenetic inference to compute the Bayes Factors that determine whether the evolutions of a set of word-order traits in four language families are correlated or independent. In the first part of the thesis, the phylogenetic trees of the Indo-European and Bantu language families are reconstructed using several methods and the differences among the resulting trees are analyzed. In the second part of the thesis, the trees are used to conduct various modifications to the original experiments by Dunn et al. in order to evaluate the accuracy and the utility of the method. We discovered that the Bayes Factors computation using the harmonic mean estimator is very unstable, and that many of the results reported by Dunn et al. are irreproducible. We also found that the computation is very sensitive to the accuracy of the data because a one-digit error can alter the Bayes Factors significantly. Furthermore, through an examination of the source code of BayesTraits, the software package that were used compute the Bayes Factors, we discovered that Dunn et al. supplied invalid inputs to the software, which renders their whole calculations erroneous. We show how the results of the computations would change if the inputs were corrected. by Pangus Ho. M.Eng. 2013-02-14T15:38:31Z 2013-02-14T15:38:31Z 2012 2012 Thesis http://hdl.handle.net/1721.1/77015 825769191 eng M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission. http://dspace.mit.edu/handle/1721.1/7582 66 p. application/pdf Massachusetts Institute of Technology
collection NDLTD
language English
format Others
sources NDLTD
topic Electrical Engineering and Computer Science.
spellingShingle Electrical Engineering and Computer Science.
Ho, Pangus
Analysis of word-order universals using Bayesian phylogenetic inference
description Thesis (M. Eng.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2012. === Cataloged from PDF version of thesis. === Includes bibliographical references (p. 65-66). === This thesis examines the novel approach by Dunn et al. (2011) that employs the Bayesian phylogenetic inference to compute the Bayes Factors that determine whether the evolutions of a set of word-order traits in four language families are correlated or independent. In the first part of the thesis, the phylogenetic trees of the Indo-European and Bantu language families are reconstructed using several methods and the differences among the resulting trees are analyzed. In the second part of the thesis, the trees are used to conduct various modifications to the original experiments by Dunn et al. in order to evaluate the accuracy and the utility of the method. We discovered that the Bayes Factors computation using the harmonic mean estimator is very unstable, and that many of the results reported by Dunn et al. are irreproducible. We also found that the computation is very sensitive to the accuracy of the data because a one-digit error can alter the Bayes Factors significantly. Furthermore, through an examination of the source code of BayesTraits, the software package that were used compute the Bayes Factors, we discovered that Dunn et al. supplied invalid inputs to the software, which renders their whole calculations erroneous. We show how the results of the computations would change if the inputs were corrected. === by Pangus Ho. === M.Eng.
author2 Robert C. Berwick.
author_facet Robert C. Berwick.
Ho, Pangus
author Ho, Pangus
author_sort Ho, Pangus
title Analysis of word-order universals using Bayesian phylogenetic inference
title_short Analysis of word-order universals using Bayesian phylogenetic inference
title_full Analysis of word-order universals using Bayesian phylogenetic inference
title_fullStr Analysis of word-order universals using Bayesian phylogenetic inference
title_full_unstemmed Analysis of word-order universals using Bayesian phylogenetic inference
title_sort analysis of word-order universals using bayesian phylogenetic inference
publisher Massachusetts Institute of Technology
publishDate 2013
url http://hdl.handle.net/1721.1/77015
work_keys_str_mv AT hopangus analysisofwordorderuniversalsusingbayesianphylogeneticinference
_version_ 1719027962092716032