| Summary: | The goal of this thesis was to examine submerged macrophoe biomass, distribution, and ecosystem effects at scales large enough to incorporate the littoral zone into models of whole lake structure and function. Submerged macrophyte biomass and distribution was shown to be highly variable between growing seasons and primarily dependant upon air temperature and the timing of the onset of the growing season. Within a growing season, a mass balance study showed an undisturbed macrophyte bed to markedly lower phytoplankton biomass: total phosphorus ratios, although the net effect of the bed on the growing season phosphorus budget was minimal. The weedbed preferentially retained phytoplankton biomass while being a source of bacterial production to the open water. These findings were mirrored at the among lake scale, as planktonic respiration and bacterial production were higher in macrophyte dominated lakes than would be expected based on phytoplankton biomass alone. Further, phytoplankton biomass was lower than would be expected based on epilimnetic phosphorus levels, showing that the classical view of pelagic interactions that proposes phosphorus determines phytoplankton abundance, which in turn determines bacterial abundance through the production of organic carbon, becomes less relevant as macrophyte cover increases. Long term phosphorus accumulation in the littoral zone was shown to be linked to macrophyte biomass, and on average almost an order of magnitude higher than calculated from the growing season (June--October) phosphorus budget, suggesting that the bulk of phosphorus accumulation in weedbeds occurs outside of the growing season. Finally, sediment core data showed that while submerged weedbeds accumulate up to four times as much bulk sediment compared to the profundal zone, phosphorus accumulation in weedbeds is much less than observed in the profundal zone. These results strongly indicating that submerged macrophyte beds play a central role in trapping ep
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