hlh-1 and the C. elegans Body Wall Muscle Transcriptional Differentiation Network

• Main Author: Kuntz, Steven Gregory
• Format: Others
• Published: 2011
• Online Access: https://thesis.library.caltech.edu/6153/1/KuntzThesis.pdf; Kuntz, Steven Gregory (2011) hlh-1 and the C. elegans Body Wall Muscle Transcriptional Differentiation Network. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/18XS-YM65. https://resolver.caltech.edu/CaltechTHESIS:10212010-102536869 <https://resolver.caltech.edu/CaltechTHESIS:10212010-102536869>

To understand the structure and function of gene regulatory networks, it is important to first catalogue the components. Measurable constituents of networks include cis-regulatory elements, identified by their conservation and ability to drive expression; transcription factor binding motifs, identified by protein binding; transcription factors, identified by their necessity in network function; and target genes, identified by their conditional expression. The heart of a regulatory network is the transcription factor, which is dedicated to its role in the network. Transcription factors must be activated and regulate downstream targets in a discrete and reproducible fashion. Any deviation in network function may result in the collapse of the network and death of the animal. Thus, a network must be robust enough to function under a variety of biological conditions. However, network redundancies are inefficient in terms of fitness and lost during the course of evolution. The network structure and function reflects these evolutionary realities: strong sequence conservation of cis-regulatory elements coupled with widespread stochastic transcription factor binding, and ancient transcription factor conservation coupled with overlapping activation of targets. The evolution of functional transcription factor networks therefore must be a balance between conservation and flexibility.