High-definition spatial transcriptomics for in situ tissue profiling

Spatial and molecular characteristics determine tissue function, yet high-resolution methods to capture both concurrently are lacking. Here, we developed high-definition spatial transcriptomics, which captures RNA from histological tissue sections on a dense, spatially barcoded bead array. Each expe...

Full description

Bibliographic Details
Main Authors: Vickovic, Sanja (Author), Eraslan, Gökcen (Author), Salmén, Fredrik (Author), Klughammer, Johanna (Author), Stenbeck, Linnea (Author), Schapiro, Denis (Author), Äijö, Tarmo (Author), Bonneau, Richard (Author), Bergenstråhle, Ludvig (Author), Navarro, José Fernandéz (Author), Gould, Joshua (Author), Griffin, Gabriel K. (Author), Borg, Åke (Author), Ronaghi, Mostafa (Author), Frisén, Jonas (Author), Lundeberg, Joakim (Author), Regev, Aviv (Author), Ståhl, Patrik L. (Author)
Other Authors: Massachusetts Institute of Technology. Department of Biology (Contributor), Koch Institute for Integrative Cancer Research at MIT (Contributor)
Format: Article
Language:English
Published: Springer Science and Business Media LLC, 2020-06-30T21:35:49Z.
Subjects:
Online Access:Get fulltext
LEADER 01843 am a22003733u 4500
001 126032
042 |a dc 
100 1 0 |a Vickovic, Sanja  |e author 
100 1 0 |a Massachusetts Institute of Technology. Department of Biology  |e contributor 
100 1 0 |a Koch Institute for Integrative Cancer Research at MIT  |e contributor 
700 1 0 |a Eraslan, Gökcen  |e author 
700 1 0 |a Salmén, Fredrik  |e author 
700 1 0 |a Klughammer, Johanna  |e author 
700 1 0 |a Stenbeck, Linnea  |e author 
700 1 0 |a Schapiro, Denis  |e author 
700 1 0 |a Äijö, Tarmo  |e author 
700 1 0 |a Bonneau, Richard  |e author 
700 1 0 |a Bergenstråhle, Ludvig  |e author 
700 1 0 |a Navarro, José Fernandéz  |e author 
700 1 0 |a Gould, Joshua  |e author 
700 1 0 |a Griffin, Gabriel K.  |e author 
700 1 0 |a Borg, Åke  |e author 
700 1 0 |a Ronaghi, Mostafa  |e author 
700 1 0 |a Frisén, Jonas  |e author 
700 1 0 |a Lundeberg, Joakim  |e author 
700 1 0 |a Regev, Aviv  |e author 
700 1 0 |a Ståhl, Patrik L.  |e author 
245 0 0 |a High-definition spatial transcriptomics for in situ tissue profiling 
260 |b Springer Science and Business Media LLC,   |c 2020-06-30T21:35:49Z. 
856 |z Get fulltext  |u https://hdl.handle.net/1721.1/126032 
520 |a Spatial and molecular characteristics determine tissue function, yet high-resolution methods to capture both concurrently are lacking. Here, we developed high-definition spatial transcriptomics, which captures RNA from histological tissue sections on a dense, spatially barcoded bead array. Each experiment recovers several hundred thousand transcript-coupled spatial barcodes at 2-μm resolution, as demonstrated in mouse brain and primary breast cancer. This opens the way to high-resolution spatial analysis of cells and tissues. 
546 |a en 
655 7 |a Article 
773 |t Nature Methods