Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes
East Asia is one of the plant diversity and endemism centers in the world, and the temporal and spatial patterns and processes of vascular plants attracted ecologists’ and biogeographers’ attention. However, the biogeographic patterns of endemic epiphytic plants in East Asia are still unclear. Here,...
Main Authors: | , , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Frontiers Media S.A.
2020-07-01
|
Series: | Frontiers in Ecology and Evolution |
Subjects: | |
Online Access: | https://www.frontiersin.org/article/10.3389/fevo.2020.00245/full |
id |
doaj-ffac13a705174b75a6ae2129016d7aab |
---|---|
record_format |
Article |
spelling |
doaj-ffac13a705174b75a6ae2129016d7aab2020-11-25T03:15:37ZengFrontiers Media S.A.Frontiers in Ecology and Evolution2296-701X2020-07-01810.3389/fevo.2020.00245532269Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast GenesJiahong Zhao0Peng Zhou1Xiaoqian Li2Xiaoqian Li3Liguo Zhang4Xiaohua Jin5Xiaoguo Xiang6Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, ChinaJiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, ChinaJiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, ChinaState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, ChinaJiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, ChinaState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, ChinaJiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, ChinaEast Asia is one of the plant diversity and endemism centers in the world, and the temporal and spatial patterns and processes of vascular plants attracted ecologists’ and biogeographers’ attention. However, the biogeographic patterns of endemic epiphytic plants in East Asia are still unclear. Here, we investigated the historical biogeography of an East Asian endemic epiphytic genus Holcoglossum Schltr. (Orchidaceae). Using DNA sequences of eleven chloroplast genes and one nuclear gene, we reconstructed a robust phylogenetic framework for Holcoglossum and used a relaxed-clock method to estimate divergent times for the genus. We inferred the ancestral range of lineages under the statistical dispersal-extinction cladogenesis (S-DEC) and statistical dispersal-vicariance analysis (S-DIVA), respectively. Biogeographical analysis suggested that the most recent common ancestor of Holcoglossum occurred in the Palaeotropical region in the late Miocene (6.33 Ma). Four dispersal events were inferred to explain the Holcoglossum expansion to Sino-Himalayan, Sino-Japanese, and Taiwan regions from the latest Miocene to Quaternary. The episodes of these events were associated with intensification of East Asian monsoon around 3.6–2.6 Ma and global cooling since the latest Pliocene. The disjunct distribution between mainland China and Taiwan was attributed by the sea-level fluctuations and climate changes during the late Pliocene. This study shed light on the biogeographic processes of endemic epiphytic plants in East Asia.https://www.frontiersin.org/article/10.3389/fevo.2020.00245/fullbiogeographyEast AsiaHolcoglossummolecular datingphylogeny |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Jiahong Zhao Peng Zhou Xiaoqian Li Xiaoqian Li Liguo Zhang Xiaohua Jin Xiaoguo Xiang |
spellingShingle |
Jiahong Zhao Peng Zhou Xiaoqian Li Xiaoqian Li Liguo Zhang Xiaohua Jin Xiaoguo Xiang Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes Frontiers in Ecology and Evolution biogeography East Asia Holcoglossum molecular dating phylogeny |
author_facet |
Jiahong Zhao Peng Zhou Xiaoqian Li Xiaoqian Li Liguo Zhang Xiaohua Jin Xiaoguo Xiang |
author_sort |
Jiahong Zhao |
title |
Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes |
title_short |
Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes |
title_full |
Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes |
title_fullStr |
Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes |
title_full_unstemmed |
Temporal and Spatial Pattern of Holcoglossum Schltr. (Orchidaceae), an East Asian Endemic Genus, Based on Nuclear and Chloroplast Genes |
title_sort |
temporal and spatial pattern of holcoglossum schltr. (orchidaceae), an east asian endemic genus, based on nuclear and chloroplast genes |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Ecology and Evolution |
issn |
2296-701X |
publishDate |
2020-07-01 |
description |
East Asia is one of the plant diversity and endemism centers in the world, and the temporal and spatial patterns and processes of vascular plants attracted ecologists’ and biogeographers’ attention. However, the biogeographic patterns of endemic epiphytic plants in East Asia are still unclear. Here, we investigated the historical biogeography of an East Asian endemic epiphytic genus Holcoglossum Schltr. (Orchidaceae). Using DNA sequences of eleven chloroplast genes and one nuclear gene, we reconstructed a robust phylogenetic framework for Holcoglossum and used a relaxed-clock method to estimate divergent times for the genus. We inferred the ancestral range of lineages under the statistical dispersal-extinction cladogenesis (S-DEC) and statistical dispersal-vicariance analysis (S-DIVA), respectively. Biogeographical analysis suggested that the most recent common ancestor of Holcoglossum occurred in the Palaeotropical region in the late Miocene (6.33 Ma). Four dispersal events were inferred to explain the Holcoglossum expansion to Sino-Himalayan, Sino-Japanese, and Taiwan regions from the latest Miocene to Quaternary. The episodes of these events were associated with intensification of East Asian monsoon around 3.6–2.6 Ma and global cooling since the latest Pliocene. The disjunct distribution between mainland China and Taiwan was attributed by the sea-level fluctuations and climate changes during the late Pliocene. This study shed light on the biogeographic processes of endemic epiphytic plants in East Asia. |
topic |
biogeography East Asia Holcoglossum molecular dating phylogeny |
url |
https://www.frontiersin.org/article/10.3389/fevo.2020.00245/full |
work_keys_str_mv |
AT jiahongzhao temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes AT pengzhou temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes AT xiaoqianli temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes AT xiaoqianli temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes AT liguozhang temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes AT xiaohuajin temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes AT xiaoguoxiang temporalandspatialpatternofholcoglossumschltrorchidaceaeaneastasianendemicgenusbasedonnuclearandchloroplastgenes |
_version_ |
1724638431699533824 |