Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution

Early-stage plant density is an essential trait that determines the fate of a genotype under given environmental conditions and management practices. The use of RGB images taken from UAVs may replace the traditional visual counting in fields with improved throughput, accuracy, and access to plant lo...

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Main Authors: K. Velumani, R. Lopez-Lozano, S. Madec, W. Guo, J. Gillet, A. Comar, F. Baret
Format: Article
Language:English
Published: American Association for the Advancement of Science 2021-01-01
Series:Plant Phenomics
Online Access:http://dx.doi.org/10.34133/2021/9824843
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spelling doaj-fd6dc039f36e4dd7aeb8a5ac2e74e9c12021-08-30T14:21:55ZengAmerican Association for the Advancement of SciencePlant Phenomics2643-65152021-01-01202110.34133/2021/9824843Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial ResolutionK. Velumani0K. Velumani1R. Lopez-Lozano2S. Madec3W. Guo4J. Gillet5A. Comar6F. Baret7Hiphen SAS,120 Rue Jean Dausset,Agroparc,Bâtiment Technicité, 84140 Avignon,FranceINRAE,UMR EMMAH,UMT CAPTE,228 Route de l'Aérodrome, Domaine Saint Paul-Site Agroparc CS 40509, 84914 Avignon Cedex 9,FranceINRAE,UMR EMMAH,UMT CAPTE,228 Route de l'Aérodrome, Domaine Saint Paul-Site Agroparc CS 40509, 84914 Avignon Cedex 9,FranceArvalis,228,Route de l'Aérodrome-CS 40509,84914 Avignon Cedex 9,FranceInternational Field Phenomics Research Laboratory,Institute for Sustainable Agro-Ecosystem Services,Graduate School of Agricultural and Life Sciences,The University of Tokyo, Tokyo,JapanHiphen SAS,120 Rue Jean Dausset,Agroparc,Bâtiment Technicité, 84140 Avignon,FranceHiphen SAS,120 Rue Jean Dausset,Agroparc,Bâtiment Technicité, 84140 Avignon,FranceINRAE,UMR EMMAH,UMT CAPTE,228 Route de l'Aérodrome, Domaine Saint Paul-Site Agroparc CS 40509, 84914 Avignon Cedex 9,FranceEarly-stage plant density is an essential trait that determines the fate of a genotype under given environmental conditions and management practices. The use of RGB images taken from UAVs may replace the traditional visual counting in fields with improved throughput, accuracy, and access to plant localization. However, high-resolution images are required to detect the small plants present at the early stages. This study explores the impact of image ground sampling distance (GSD) on the performances of maize plant detection at three-to-five leaves stage using Faster-RCNN object detection algorithm. Data collected at high resolution (GSD≈0.3 cm) over six contrasted sites were used for model training. Two additional sites with images acquired both at high and low (GSD≈0.6 cm) resolutions were used to evaluate the model performances. Results show that Faster-RCNN achieved very good plant detection and counting (rRMSE=0.08) performances when native high-resolution images are used both for training and validation. Similarly, good performances were observed (rRMSE=0.11) when the model is trained over synthetic low-resolution images obtained by downsampling the native training high-resolution images and applied to the synthetic low-resolution validation images. Conversely, poor performances are obtained when the model is trained on a given spatial resolution and applied to another spatial resolution. Training on a mix of high- and low-resolution images allows to get very good performances on the native high-resolution (rRMSE=0.06) and synthetic low-resolution (rRMSE=0.10) images. However, very low performances are still observed over the native low-resolution images (rRMSE=0.48), mainly due to the poor quality of the native low-resolution images. Finally, an advanced super resolution method based on GAN (generative adversarial network) that introduces additional textural information derived from the native high-resolution images was applied to the native low-resolution validation images. Results show some significant improvement (rRMSE=0.22) compared to bicubic upsampling approach, while still far below the performances achieved over the native high-resolution images.http://dx.doi.org/10.34133/2021/9824843
collection DOAJ
language English
format Article
sources DOAJ
author K. Velumani
K. Velumani
R. Lopez-Lozano
S. Madec
W. Guo
J. Gillet
A. Comar
F. Baret
spellingShingle K. Velumani
K. Velumani
R. Lopez-Lozano
S. Madec
W. Guo
J. Gillet
A. Comar
F. Baret
Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution
Plant Phenomics
author_facet K. Velumani
K. Velumani
R. Lopez-Lozano
S. Madec
W. Guo
J. Gillet
A. Comar
F. Baret
author_sort K. Velumani
title Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution
title_short Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution
title_full Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution
title_fullStr Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution
title_full_unstemmed Estimates of Maize Plant Density from UAV RGB Images Using Faster-RCNN Detection Model: Impact of the Spatial Resolution
title_sort estimates of maize plant density from uav rgb images using faster-rcnn detection model: impact of the spatial resolution
publisher American Association for the Advancement of Science
series Plant Phenomics
issn 2643-6515
publishDate 2021-01-01
description Early-stage plant density is an essential trait that determines the fate of a genotype under given environmental conditions and management practices. The use of RGB images taken from UAVs may replace the traditional visual counting in fields with improved throughput, accuracy, and access to plant localization. However, high-resolution images are required to detect the small plants present at the early stages. This study explores the impact of image ground sampling distance (GSD) on the performances of maize plant detection at three-to-five leaves stage using Faster-RCNN object detection algorithm. Data collected at high resolution (GSD≈0.3 cm) over six contrasted sites were used for model training. Two additional sites with images acquired both at high and low (GSD≈0.6 cm) resolutions were used to evaluate the model performances. Results show that Faster-RCNN achieved very good plant detection and counting (rRMSE=0.08) performances when native high-resolution images are used both for training and validation. Similarly, good performances were observed (rRMSE=0.11) when the model is trained over synthetic low-resolution images obtained by downsampling the native training high-resolution images and applied to the synthetic low-resolution validation images. Conversely, poor performances are obtained when the model is trained on a given spatial resolution and applied to another spatial resolution. Training on a mix of high- and low-resolution images allows to get very good performances on the native high-resolution (rRMSE=0.06) and synthetic low-resolution (rRMSE=0.10) images. However, very low performances are still observed over the native low-resolution images (rRMSE=0.48), mainly due to the poor quality of the native low-resolution images. Finally, an advanced super resolution method based on GAN (generative adversarial network) that introduces additional textural information derived from the native high-resolution images was applied to the native low-resolution validation images. Results show some significant improvement (rRMSE=0.22) compared to bicubic upsampling approach, while still far below the performances achieved over the native high-resolution images.
url http://dx.doi.org/10.34133/2021/9824843
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