Molecular Detection of Avian Pathogenic <i>Escherichia coli</i> (APEC) for the First Time in Layer Farms in Bangladesh and Their Antibiotic Resistance Patterns

• Main Authors: Samina Ievy, Md. Saiful Islam, Md. Abdus Sobur, Mithun Talukder, Md. Bahanur Rahman, Mohammad Ferdousur Rahman Khan, Md. Tanvir Rahman
• Format: Article
• Language: English
• Published: MDPI AG 2020-07-01
• Series: Microorganisms
• Subjects: avian pathogenic <i>E. coli</i>; virulence genes; multidrug-resistant; layer farm; air; public health
• Online Access: https://www.mdpi.com/2076-2607/8/7/1021

Avian pathogenic <i>Escherichia coli</i> (APEC) causes significant economic losses in poultry industries. Here, we determined for the first time in Bangladesh, the prevalence of APEC-associated virulence genes in <i>E. coli</i> isolated from layer farms and their antibiotic resistance patterns. A total of 99 samples comprising internal organs, feces, and air were collected from 32 layer farms. Isolation was performed by culturing samples on eosin–methylene blue agar plates, while the molecular detection of APEC was performed by PCR, and antibiograms were performed by disk diffusion. Among the samples, 36 were positive for the APEC-associated virulence genes <i>fimC</i>, <i>iucD,</i> and <i>papC</i>. Out of 36 isolates, 7, 18, and 11 were positive, respectively, for three virulence genes (<i>papC</i>, <i>fimC</i>, and <i>iucD</i>), two virulence genes, and a single virulence gene. Although the detection of virulence genes was significantly higher in the internal organs, the air and feces were also positive. The antibiograms revealed that all the isolates (100%) were resistant to ampicillin and tetracycline; 97.2%, to chloramphenicol and erythromycin; 55.5%, to enrofloxacin; 50.0%, to norfloxacin and ciprofloxacin; 19.4%, to streptomycin; 11.1%, to colistin; and 8.33%, to gentamicin. Interestingly, all the isolates were multidrug-resistant (MDR). Spearman’s rank correlation coefficient analysis revealed the strongest significant correlation between norfloxacin and ciprofloxacin resistance. This is the first study in Bangladesh describing the molecular detection of APEC in layer farms. Isolated APEC can now be used for detailed genetic characterization and assessing the impact on public health.