Novel use of matched filtering for synaptic event detection and extraction.

Efficient and dependable methods for detection and measurement of synaptic events are important for studies of synaptic physiology and neuronal circuit connectivity. As the published methods with detection algorithms based upon amplitude thresholding and fixed or scaled template comparisons are of l...

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Main Authors: Yulin Shi, Zoran Nenadic, Xiangmin Xu
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2010-11-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC2991367?pdf=render
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spelling doaj-fd1898923c524052bb80ec0884cdbb562020-11-24T20:51:47ZengPublic Library of Science (PLoS)PLoS ONE1932-62032010-11-01511e1551710.1371/journal.pone.0015517Novel use of matched filtering for synaptic event detection and extraction.Yulin ShiZoran NenadicXiangmin XuEfficient and dependable methods for detection and measurement of synaptic events are important for studies of synaptic physiology and neuronal circuit connectivity. As the published methods with detection algorithms based upon amplitude thresholding and fixed or scaled template comparisons are of limited utility for detection of signals with variable amplitudes and superimposed events that have complex waveforms, previous techniques are not applicable for detection of evoked synaptic events in photostimulation and other similar experimental situations. Here we report on a novel technique that combines the design of a bank of approximate matched filters with the detection and estimation theory to automatically detect and extract photostimluation-evoked excitatory postsynaptic currents (EPSCs) from individually recorded neurons in cortical circuit mapping experiments. The sensitivity and specificity of the method were evaluated on both simulated and experimental data, with its performance comparable to that of visual event detection performed by human operators. This new technique was applied to quantify and compare the EPSCs obtained from excitatory pyramidal cells and fast-spiking interneurons. In addition, our technique has been further applied to the detection and analysis of inhibitory postsynaptic current (IPSC) responses. Given the general purpose of our matched filtering and signal recognition algorithms, we expect that our technique can be appropriately modified and applied to detect and extract other types of electrophysiological and optical imaging signals.http://europepmc.org/articles/PMC2991367?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author Yulin Shi
Zoran Nenadic
Xiangmin Xu
spellingShingle Yulin Shi
Zoran Nenadic
Xiangmin Xu
Novel use of matched filtering for synaptic event detection and extraction.
PLoS ONE
author_facet Yulin Shi
Zoran Nenadic
Xiangmin Xu
author_sort Yulin Shi
title Novel use of matched filtering for synaptic event detection and extraction.
title_short Novel use of matched filtering for synaptic event detection and extraction.
title_full Novel use of matched filtering for synaptic event detection and extraction.
title_fullStr Novel use of matched filtering for synaptic event detection and extraction.
title_full_unstemmed Novel use of matched filtering for synaptic event detection and extraction.
title_sort novel use of matched filtering for synaptic event detection and extraction.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2010-11-01
description Efficient and dependable methods for detection and measurement of synaptic events are important for studies of synaptic physiology and neuronal circuit connectivity. As the published methods with detection algorithms based upon amplitude thresholding and fixed or scaled template comparisons are of limited utility for detection of signals with variable amplitudes and superimposed events that have complex waveforms, previous techniques are not applicable for detection of evoked synaptic events in photostimulation and other similar experimental situations. Here we report on a novel technique that combines the design of a bank of approximate matched filters with the detection and estimation theory to automatically detect and extract photostimluation-evoked excitatory postsynaptic currents (EPSCs) from individually recorded neurons in cortical circuit mapping experiments. The sensitivity and specificity of the method were evaluated on both simulated and experimental data, with its performance comparable to that of visual event detection performed by human operators. This new technique was applied to quantify and compare the EPSCs obtained from excitatory pyramidal cells and fast-spiking interneurons. In addition, our technique has been further applied to the detection and analysis of inhibitory postsynaptic current (IPSC) responses. Given the general purpose of our matched filtering and signal recognition algorithms, we expect that our technique can be appropriately modified and applied to detect and extract other types of electrophysiological and optical imaging signals.
url http://europepmc.org/articles/PMC2991367?pdf=render
work_keys_str_mv AT yulinshi noveluseofmatchedfilteringforsynapticeventdetectionandextraction
AT zorannenadic noveluseofmatchedfilteringforsynapticeventdetectionandextraction
AT xiangminxu noveluseofmatchedfilteringforsynapticeventdetectionandextraction
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