SSAW: A new sequence similarity analysis method based on the stationary discrete wavelet transform

SSAW: A new sequence similarity analysis method based on the stationary discrete wavelet transform

Abstract Background Alignment-free sequence similarity analysis methods often lead to significant savings in computational time over alignment-based counterparts. Results A new alignment-free sequence similarity analysis method, called SSAW is proposed. SSAW stands for Sequence Similarity Analysis u...

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Bibliographic Details
Main Authors: Jie Lin, Jing Wei, Donald Adjeroh, Bing-Hua Jiang, Yue Jiang
Format: Article
Language:English
Published: BMC 2018-05-01
Series:BMC Bioinformatics
Subjects:
k-mers
Wavelet transform
Complex numbers
Sequence similarity
Frequency domain
Online Access:http://link.springer.com/article/10.1186/s12859-018-2155-9

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http://link.springer.com/article/10.1186/s12859-018-2155-9

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