An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies

Paleoclimatic and paleoceanographic studies routinely rely on the usage of foraminiferal calcite through faunal, morphometric and physico-chemical proxies. The application of such proxies presupposes the extraction and cleaning of these biomineralized components from ocean sediments in the most effi...

Full description

Bibliographic Details
Main Authors: Stergios D. Zarkogiannis, George Kontakiotis, Georgia Gkaniatsa, Venkata S. C. Kuppili, Shashidhara Marathe, Kazimir Wanelik, Vasiliki Lianou, Evanggelia Besiou, Panayiota Makri, Assimina Antonarakou
Format: Article
Language:English
Published: MDPI AG 2020-12-01
Series:Journal of Marine Science and Engineering
Subjects:
Online Access:https://www.mdpi.com/2077-1312/8/12/998
id doaj-f97f9758bb9c4345897ea69913208a56
record_format Article
collection DOAJ
language English
format Article
sources DOAJ
author Stergios D. Zarkogiannis
George Kontakiotis
Georgia Gkaniatsa
Venkata S. C. Kuppili
Shashidhara Marathe
Kazimir Wanelik
Vasiliki Lianou
Evanggelia Besiou
Panayiota Makri
Assimina Antonarakou
spellingShingle Stergios D. Zarkogiannis
George Kontakiotis
Georgia Gkaniatsa
Venkata S. C. Kuppili
Shashidhara Marathe
Kazimir Wanelik
Vasiliki Lianou
Evanggelia Besiou
Panayiota Makri
Assimina Antonarakou
An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies
Journal of Marine Science and Engineering
cleaning protocol
unconsolidated core sediments
shell weight
climate reconstruction
synchrotron X-ray microtomography (SμCT)
foraminiferal-based proxies
author_facet Stergios D. Zarkogiannis
George Kontakiotis
Georgia Gkaniatsa
Venkata S. C. Kuppili
Shashidhara Marathe
Kazimir Wanelik
Vasiliki Lianou
Evanggelia Besiou
Panayiota Makri
Assimina Antonarakou
author_sort Stergios D. Zarkogiannis
title An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies
title_short An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies
title_full An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies
title_fullStr An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies
title_full_unstemmed An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic Proxies
title_sort improved cleaning protocol for foraminiferal calcite from unconsolidated core sediments: hypercal—a new practice for micropaleontological and paleoclimatic proxies
publisher MDPI AG
series Journal of Marine Science and Engineering
issn 2077-1312
publishDate 2020-12-01
description Paleoclimatic and paleoceanographic studies routinely rely on the usage of foraminiferal calcite through faunal, morphometric and physico-chemical proxies. The application of such proxies presupposes the extraction and cleaning of these biomineralized components from ocean sediments in the most efficient way, a process which is often labor intensive and time consuming. In this respect, in this study we performed a systematic experiment for planktonic foraminiferal specimen cleaning using different chemical treatments and evaluated the resulting data of a Late Quaternary gravity core sample from the Aegean Sea. All cleaning procedures adopted here were made on the basis of their minimum potential bias upon foraminiferal proxies, such as the faunal assemblages, degree of fragmentation, stable isotope composition (δ<sup>18</sup>O and δ<sup>13</sup>C) and/or Mg/Ca ratios that are frequently used as proxies for surface-ocean climate parameters (e.g., sea surface temperature, sea surface salinity). Six different protocols were tested, involving washing, sieving, and chemical treatment of the samples with hydrogen peroxide and/or sodium hexametaphosphate (Calgon<sup>®</sup>). Single species foraminifera shell weighing was combined with high-resolution scanning electron microscopy (SEM) and synchrotron X-ray microtomography (SμCT) of the material processed by each of the cleaning protocols, in order to assess the decontamination degree of specimen’s ultrastructure and interior. It appeared that a good compromise between time and cleaning efficiency is the simultaneous treatment of samples with a mixed hydrogen peroxide and Calgon solution, while the most effective way to almost completely decontaminate the calcareous components from undesirable sedimentary material is a two-step treatment—initially with hydrogen peroxide and subsequently with Calgon solutions.
topic cleaning protocol
unconsolidated core sediments
shell weight
climate reconstruction
synchrotron X-ray microtomography (SμCT)
foraminiferal-based proxies
url https://www.mdpi.com/2077-1312/8/12/998
work_keys_str_mv AT stergiosdzarkogiannis animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT georgekontakiotis animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT georgiagkaniatsa animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT venkatasckuppili animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT shashidharamarathe animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT kazimirwanelik animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT vasilikilianou animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT evanggeliabesiou animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT panayiotamakri animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT assiminaantonarakou animprovedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT stergiosdzarkogiannis improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT georgekontakiotis improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT georgiagkaniatsa improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT venkatasckuppili improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT shashidharamarathe improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT kazimirwanelik improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT vasilikilianou improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT evanggeliabesiou improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT panayiotamakri improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
AT assiminaantonarakou improvedcleaningprotocolforforaminiferalcalcitefromunconsolidatedcoresedimentshypercalanewpracticeformicropaleontologicalandpaleoclimaticproxies
_version_ 1721557642039525376
spelling doaj-f97f9758bb9c4345897ea69913208a562021-04-02T16:13:58ZengMDPI AGJournal of Marine Science and Engineering2077-13122020-12-01899899810.3390/jmse8120998An Improved Cleaning Protocol for Foraminiferal Calcite from Unconsolidated Core Sediments: HyPerCal—A New Practice for Micropaleontological and Paleoclimatic ProxiesStergios D. Zarkogiannis0George Kontakiotis1Georgia Gkaniatsa2Venkata S. C. Kuppili3Shashidhara Marathe4Kazimir Wanelik5Vasiliki Lianou6Evanggelia Besiou7Panayiota Makri8Assimina Antonarakou9Department of Earth Sciences, University of Oxford, Oxford OX1 3AN, UKFaculty of Geology & Geoenvironment, Department of Historical Geology-Paleontology, School of Earth Sciences, National & Kapodistrian University of Athens, Zografou University Campus, 157 84 Athens, GreeceFaculty of Geology & Geoenvironment, Department of Historical Geology-Paleontology, School of Earth Sciences, National & Kapodistrian University of Athens, Zografou University Campus, 157 84 Athens, GreeceDiamond Light Source, Harwell Science and Innovation Campus, Oxford OX11 0DE, UKDiamond Light Source, Harwell Science and Innovation Campus, Oxford OX11 0DE, UKDiamond Light Source, Harwell Science and Innovation Campus, Oxford OX11 0DE, UKFaculty of Geology & Geoenvironment, Department of Historical Geology-Paleontology, School of Earth Sciences, National & Kapodistrian University of Athens, Zografou University Campus, 157 84 Athens, GreeceFaculty of Geology & Geoenvironment, Department of Historical Geology-Paleontology, School of Earth Sciences, National & Kapodistrian University of Athens, Zografou University Campus, 157 84 Athens, GreeceFaculty of Geology & Geoenvironment, Department of Historical Geology-Paleontology, School of Earth Sciences, National & Kapodistrian University of Athens, Zografou University Campus, 157 84 Athens, GreeceFaculty of Geology & Geoenvironment, Department of Historical Geology-Paleontology, School of Earth Sciences, National & Kapodistrian University of Athens, Zografou University Campus, 157 84 Athens, GreecePaleoclimatic and paleoceanographic studies routinely rely on the usage of foraminiferal calcite through faunal, morphometric and physico-chemical proxies. The application of such proxies presupposes the extraction and cleaning of these biomineralized components from ocean sediments in the most efficient way, a process which is often labor intensive and time consuming. In this respect, in this study we performed a systematic experiment for planktonic foraminiferal specimen cleaning using different chemical treatments and evaluated the resulting data of a Late Quaternary gravity core sample from the Aegean Sea. All cleaning procedures adopted here were made on the basis of their minimum potential bias upon foraminiferal proxies, such as the faunal assemblages, degree of fragmentation, stable isotope composition (δ<sup>18</sup>O and δ<sup>13</sup>C) and/or Mg/Ca ratios that are frequently used as proxies for surface-ocean climate parameters (e.g., sea surface temperature, sea surface salinity). Six different protocols were tested, involving washing, sieving, and chemical treatment of the samples with hydrogen peroxide and/or sodium hexametaphosphate (Calgon<sup>®</sup>). Single species foraminifera shell weighing was combined with high-resolution scanning electron microscopy (SEM) and synchrotron X-ray microtomography (SμCT) of the material processed by each of the cleaning protocols, in order to assess the decontamination degree of specimen’s ultrastructure and interior. It appeared that a good compromise between time and cleaning efficiency is the simultaneous treatment of samples with a mixed hydrogen peroxide and Calgon solution, while the most effective way to almost completely decontaminate the calcareous components from undesirable sedimentary material is a two-step treatment—initially with hydrogen peroxide and subsequently with Calgon solutions.https://www.mdpi.com/2077-1312/8/12/998cleaning protocolunconsolidated core sedimentsshell weightclimate reconstructionsynchrotron X-ray microtomography (SμCT)foraminiferal-based proxies