Morphological and molecular diversity of endophytic Colletotrichum gloeosporioides from tea plant, Camellia sinensis (L.) O. Kuntze of Assam, India

• Main Authors: Aparna Jyoti Rabha, Ashok Naglot, Gauri Dutta Sharma, Hemant Kumar Gogoi, Vikas Kumar Gupta, Devendra Dutta Shreemali, Vijay Veer
• Format: Article
• Language: English
• Published: SpringerOpen 2016-06-01
• Series: Journal of Genetic Engineering and Biotechnology
• Subjects: Morphological characterization; ITS-rDNA; RAPD; Genetic diversity
• Online Access: http://www.sciencedirect.com/science/article/pii/S1687157X15000645

Thirty isolates of endophytic fungi were isolated from healthy asymptomatic leaves of tea plant (Camellia sinensis) and identified morphologically based on colony morphology, spore shape and size, growth and sporulation rate. Internal transcribed spacer r-DNA sequence analysis supported for molecular identification of all the isolates. Based on morphological and molecular characteristics the isolates were identified as Colletotrichum gloeosporioides. Variations on colony morphology which included the production of conidial masses, led to divide the isolates into different groups. Variations on spore size, growth rate and sporulation rate were exhibited by all the isolates. With RAPD molecular markers, genetic variations among the thirty isolates were observed. Genetic variations and relatedness among the thirty isolates were analyzed with UPGMA phylogram using NTSYS program. Two major groups were obtained among the thirty isolates. Group I comprised of 16 isolates which included three sub groups (Ia, Ib and Ic) and Group II constituted fourteen isolates and it also had three sub groups (IIa, IIb and IIc). A partial co-relationship among the isolates was established on the basis of morphological and molecular based clustering.