Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence

Novel therapeutic approaches for treating inherited retinal degenerations (IRDs) prompt a need to understand which patients with impaired vision have the anatomical potential to gain from participation in a clinical trial. We used supervised machine learning to predict foveal function from foveal st...

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Main Authors: Alexander Sumaroka, Artur V. Cideciyan, Rebecca Sheplock, Vivian Wu, Susanne Kohl, Bernd Wissinger, Samuel G. Jacobson
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-08-01
Series:Frontiers in Neuroscience
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fnins.2020.00800/full
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spelling doaj-f940029089eb4b4881ab31fb2ee2aa9b2020-11-25T03:27:17ZengFrontiers Media S.A.Frontiers in Neuroscience1662-453X2020-08-011410.3389/fnins.2020.00800545717Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial IntelligenceAlexander Sumaroka0Artur V. Cideciyan1Rebecca Sheplock2Vivian Wu3Susanne Kohl4Bernd Wissinger5Samuel G. Jacobson6Scheie Eye Institute, Department of Ophthalmology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United StatesScheie Eye Institute, Department of Ophthalmology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United StatesScheie Eye Institute, Department of Ophthalmology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United StatesScheie Eye Institute, Department of Ophthalmology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United StatesMolecular Genetics Laboratory, Institute for Ophthalmic Research, Centre for Ophthalmology, University of Tüebingen, Tüebingen, GermanyMolecular Genetics Laboratory, Institute for Ophthalmic Research, Centre for Ophthalmology, University of Tüebingen, Tüebingen, GermanyScheie Eye Institute, Department of Ophthalmology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United StatesNovel therapeutic approaches for treating inherited retinal degenerations (IRDs) prompt a need to understand which patients with impaired vision have the anatomical potential to gain from participation in a clinical trial. We used supervised machine learning to predict foveal function from foveal structure in blue cone monochromacy (BCM), an X-linked congenital cone photoreceptor dysfunction secondary to mutations in the OPN1LW/OPN1MW gene cluster. BCM patients with either disease-associated large deletion or missense mutations were studied and results compared with those from subjects with other forms of IRD and various degrees of preserved central structure and function. A machine learning technique was used to associate foveal sensitivities and best-corrected visual acuities to foveal structure in IRD patients. Two random forest (RF) models trained on IRD data were applied to predict foveal function in BCM. A curve fitting method was also used and results compared with those of the RF models. The BCM and IRD patients had a comparable range of foveal structure. IRD patients had peak sensitivity at the fovea. Machine learning could successfully predict foveal sensitivity (FS) results from segmented or un-segmented optical coherence tomography (OCT) input. Application of machine learning predictions to BCM at the fovea showed differences between predicted and measured sensitivities, thereby defining treatment potential. The curve fitting method provided similar results. Given a measure of visual acuity (VA) and foveal outer nuclear layer thickness, the question of how many lines of acuity would represent the best efficacious result for each BCM patient could be answered. We propose that foveal vision improvement potential in BCM is predictable from retinal structure using machine learning and curve fitting approaches. This should allow estimates of maximal efficacy in patients being considered for clinical trials and also guide decisions about dosing.https://www.frontiersin.org/article/10.3389/fnins.2020.00800/fullmachine learningrandom forestoptical coherence tomographychromatic perimetryretinal degenerationrods
collection DOAJ
language English
format Article
sources DOAJ
author Alexander Sumaroka
Artur V. Cideciyan
Rebecca Sheplock
Vivian Wu
Susanne Kohl
Bernd Wissinger
Samuel G. Jacobson
spellingShingle Alexander Sumaroka
Artur V. Cideciyan
Rebecca Sheplock
Vivian Wu
Susanne Kohl
Bernd Wissinger
Samuel G. Jacobson
Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence
Frontiers in Neuroscience
machine learning
random forest
optical coherence tomography
chromatic perimetry
retinal degeneration
rods
author_facet Alexander Sumaroka
Artur V. Cideciyan
Rebecca Sheplock
Vivian Wu
Susanne Kohl
Bernd Wissinger
Samuel G. Jacobson
author_sort Alexander Sumaroka
title Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence
title_short Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence
title_full Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence
title_fullStr Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence
title_full_unstemmed Foveal Therapy in Blue Cone Monochromacy: Predictions of Visual Potential From Artificial Intelligence
title_sort foveal therapy in blue cone monochromacy: predictions of visual potential from artificial intelligence
publisher Frontiers Media S.A.
series Frontiers in Neuroscience
issn 1662-453X
publishDate 2020-08-01
description Novel therapeutic approaches for treating inherited retinal degenerations (IRDs) prompt a need to understand which patients with impaired vision have the anatomical potential to gain from participation in a clinical trial. We used supervised machine learning to predict foveal function from foveal structure in blue cone monochromacy (BCM), an X-linked congenital cone photoreceptor dysfunction secondary to mutations in the OPN1LW/OPN1MW gene cluster. BCM patients with either disease-associated large deletion or missense mutations were studied and results compared with those from subjects with other forms of IRD and various degrees of preserved central structure and function. A machine learning technique was used to associate foveal sensitivities and best-corrected visual acuities to foveal structure in IRD patients. Two random forest (RF) models trained on IRD data were applied to predict foveal function in BCM. A curve fitting method was also used and results compared with those of the RF models. The BCM and IRD patients had a comparable range of foveal structure. IRD patients had peak sensitivity at the fovea. Machine learning could successfully predict foveal sensitivity (FS) results from segmented or un-segmented optical coherence tomography (OCT) input. Application of machine learning predictions to BCM at the fovea showed differences between predicted and measured sensitivities, thereby defining treatment potential. The curve fitting method provided similar results. Given a measure of visual acuity (VA) and foveal outer nuclear layer thickness, the question of how many lines of acuity would represent the best efficacious result for each BCM patient could be answered. We propose that foveal vision improvement potential in BCM is predictable from retinal structure using machine learning and curve fitting approaches. This should allow estimates of maximal efficacy in patients being considered for clinical trials and also guide decisions about dosing.
topic machine learning
random forest
optical coherence tomography
chromatic perimetry
retinal degeneration
rods
url https://www.frontiersin.org/article/10.3389/fnins.2020.00800/full
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