ASP-based method for the enumeration of attractors in non-deterministic synchronous and asynchronous multi-valued networks

ASP-based method for the enumeration of attractors in non-deterministic synchronous and asynchronous multi-valued networks

Abstract Background This paper addresses the problem of finding attractors in biological regulatory networks. We focus here on non-deterministic synchronous and asynchronous multi-valued networks, modeled using automata networks (AN). AN is a general and well-suited formalism to study complex intera...

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Bibliographic Details
Main Authors: Emna Ben Abdallah, Maxime Folschette, Olivier Roux, Morgan Magnin
Format: Article
Language:English
Published: BMC 2017-08-01
Series:Algorithms for Molecular Biology
Subjects:
Biological regulatory network
Multiple-valued networks
Attractors
Steady states
Cycles
Answer set programming
Online Access:http://link.springer.com/article/10.1186/s13015-017-0111-2

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