External Quality Assessment Program for Next-Generation Sequencing-Based HIV Drug Resistance Testing: Logistical Considerations

External Quality Assessment Program for Next-Generation Sequencing-Based HIV Drug Resistance Testing: Logistical Considerations

Next-generation sequencing (NGS) is likely to become the new standard method for HIV drug resistance (HIVDR) genotyping. Despite the significant advances in the development of wet-lab protocols and bioinformatic data processing pipelines, one often-missing critical component of an NGS HIVDR assay fo...

Full description

Bibliographic Details
Main Authors:	Hezhao Ji, Neil Parkin, Feng Gao, Thomas Denny, Cheryl Jennings, Paul Sandstrom, Rami Kantor
Format:	Article
Language:	English
Published:	MDPI AG 2020-05-01
Series:	Viruses
Subjects:	HIV drug resistance next generation sequencing external quality assessment
Online Access:	https://www.mdpi.com/1999-4915/12/5/556

Similar Items

Application of a Sanger-Based External Quality Assurance Strategy for the Transition of HIV-1 Drug Resistance Assays to Next Generation Sequencing
by: Cheryl Jennings, et al.
Published: (2020-12-01)

Dry Panels Supporting External Quality Assessment Programs for Next Generation Sequencing-Based HIV Drug Resistance Testing
by: Marc Noguera-Julian, et al.
Published: (2020-06-01)

External Quality Assessment for Next-Generation Sequencing-Based HIV Drug Resistance Testing: Unique Requirements and Challenges
by: Emma R. Lee, et al.
Published: (2020-05-01)

Next-Generation Sequencing for HIV Drug Resistance Testing: Laboratory, Clinical, and Implementation Considerations
by: Santiago Ávila-Ríos, et al.
Published: (2020-06-01)

Development and Application of Performance Assessment Criteria for Next-Generation Sequencing-Based HIV Drug Resistance Assays
by: Michael G. Becker, et al.
Published: (2020-06-01)

Next generation sequencing based in-house HIV genotyping method: validation report
by: Alisen Ayitewala, et al.
Published: (2021-10-01)

Metagenomic next-generation sequencing for the early diagnosis of talaromycosis in HIV-uninfected patients: five cases report
by: Qiuhua Chen, et al.
Published: (2021-08-01)

Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping
by: Neil T. Parkin, et al.
Published: (2020-06-01)

Clinical usefulness of metagenomic next-generation sequencing for the diagnosis of central nervous system infection in people living with HIV
by: Jun Chen, et al.
Published: (2021-06-01)

Progressive Multifocal Leukoencephalopathy Diagnosed by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid in an HIV Patient
by: Huan Xia, et al.
Published: (2019-11-01)

Next-generation sequencing analyses of the emergence and maintenance of mutations in CTL epitopes in HIV controllers with differential viremia control
by: Diogo Gama Caetano, et al.
Published: (2018-09-01)

HIV Drug Resistance Mutations Detection by Next-Generation Sequencing during Antiretroviral Therapy Interruption in China
by: Miaomiao Li, et al.
Published: (2021-02-01)

Application of next generation sequencing in HIV drug resistance studies in Africa, 2005–2019: A systematic review
by: Phindulo Mathobo, et al.
Published: (2021-07-01)

Are We Ready for NGS HIV Drug Resistance Testing? The Second “Winnipeg Consensus” Symposium
by: Hezhao Ji, et al.
Published: (2020-05-01)

Case Report: Next-Generation Sequencing in Diagnosis of Pneumonia Due to Pneumocystis jirovecii and Cytomegalovirus in a Patient With HIV Infection
by: Yirui Xie, et al.
Published: (2021-03-01)

Prevalence of HIV-1 Integrase Strand Transfer Inhibitor Resistance in Treatment-Naïve Voluntary Counselling and Testing Clients by Population Sequencing and Illumina Next-Generation Sequencing in Taiwan
by: Tsai HC, et al.
Published: (2020-12-01)

Sanger and Next Generation Sequencing Approaches to Evaluate HIV-1 Virus in Blood Compartments
by: Andrea Arias, et al.
Published: (2018-08-01)

A rigorous exploration of anal HPV genotypes using a next‐generation sequencing (NGS) approach in HIV‐infected men who have sex with men at risk for developing anal cancer
by: Chandrika J. Piyathilake, et al.
Published: (2020-01-01)

Chemistry and Bioinformatics Considerations in Using Next-Generation Sequencing Technologies to Inferring HIV Proviral DNA Genome-Intactness
by: Guinevere Q. Lee
Published: (2021-09-01)

Rare Presentation of Toxoplasma Pneumonitis in the Absence of Neurological Symptoms in an AIDS Patient and Use of Next-Generation Sequencing for Diagnosis
by: Moni Roy, et al.
Published: (2020-09-01)

Universal Target Capture of HIV Sequences From NGS Libraries
by: Julie Yamaguchi, et al.
Published: (2018-09-01)

Fact and Fiction about 1%: Next Generation Sequencing and the Detection of Minor Drug Resistant Variants in HIV-1 Populations with and without Unique Molecular Identifiers
by: Shuntai Zhou, et al.
Published: (2020-08-01)

Quality Control of Next-Generation Sequencing-Based HIV-1 Drug Resistance Data in Clinical Laboratory Information Systems Framework
by: Rupert Capina, et al.
Published: (2020-06-01)

Insights into the Structural Basis of Antibody Affinity Maturation from Next-Generation Sequencing
by: Arjun K. Mishra, et al.
Published: (2018-02-01)

New Technology Development for Next-Generation Sequencing
by: Randel, Melissa
Published: (2017)

Next Generation Sequencing for HIV-1 Drug Resistance Testing—A Special Issue Walkthrough
by: Rami Kantor
Published: (2021-02-01)

Probiotics in the next-generation sequencing era
by: Jotham Suez, et al.
Published: (2020-01-01)

Next-generation sequencing in thyroid cancer
by: Yoon Jin Cha, et al.
Published: (2016-11-01)

Next-generation sequencing profiling of mitochondrial genomes in gout
by: Chia-Chun Tseng, et al.
Published: (2018-07-01)

Is Next-Generation Sequencing Appropriate for the Clinic?
by: Ramzi Hassouneh
Published: (2014-11-01)

NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program
by: Thomas Delcourt, et al.
Published: (2020-10-01)

Next Generation Sequencing of miRNAs – Strategies, Resources and Methods
by: Susanne Motameny, et al.
Published: (2010-06-01)

Genetic tests by next-generation sequencing in children with developmental delay and/or intellectual disability
by: Ji Yoon Han, et al.
Published: (2020-06-01)

Next-Generation Sequencing-Based Molecular Diagnosis of Choroideremia
by: Kayo Shimizu, et al.
Published: (2015-07-01)

Next-generation sequencing library construction on a surface
by: Kuan Feng, et al.
Published: (2018-05-01)

Next Generation Sequencing Technology in Lung Cancer Diagnosis
by: Calin Cainap, et al.
Published: (2021-09-01)

Next Generation Sequencing: Advances in Characterizing the Methylome
by: Kristen H. Taylor, et al.
Published: (2010-07-01)

Next Generation Sequencing in the Diagnosis of Familial Hypercholesterolemia
by: Maritza Jenny Hernández-Cuevas, et al.
Published: (2019-09-01)

DEVELOPMENT OF FORMULATION AND CONSIDERATION OF EXTERNAL MANAGEMENT PLANS
by: S. E. Kovan, et al.
Published: (2014-10-01)

Understanding the impact of external context on community-based implementation of an evidence-based HIV risk reduction intervention
by: Alison B. Hamilton, et al.
Published: (2018-01-01)