Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data

Significance: Autism is a developmental disorder that is currently diagnosed using behavioral tests which can be subjective. Consequently, objective non-invasive imaging biomarkers of Autism are being actively researched. The common theme emerging from previous functional magnetic resonance imaging...

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Main Authors: Mohammed A. Syed, Zhi Yang, Xiaoping P. Hu, Gopikrishna Deshpande
Format: Article
Language:English
Published: Frontiers Media S.A. 2017-09-01
Series:Frontiers in Neuroscience
Subjects:
Online Access:http://journal.frontiersin.org/article/10.3389/fnins.2017.00459/full
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spelling doaj-f1ea05a89f734274b5506f01e15bea962020-11-25T01:08:04ZengFrontiers Media S.A.Frontiers in Neuroscience1662-453X2017-09-011110.3389/fnins.2017.00459251884Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI DataMohammed A. Syed0Zhi Yang1Zhi Yang2Xiaoping P. Hu3Gopikrishna Deshpande4Gopikrishna Deshpande5Gopikrishna Deshpande6Computer Science and Software Engineering Department, Auburn UniversityAuburn, AL, United StatesShanghai Key Laboratory of Psychotic Disorders, Shanghai Mental Health Center, Shanghai Jiao Tong University School of MedicineShanghai, ChinaBrain Science and Technology Research Center, Shanghai Jiao Tong UniversityShanghai, ChinaThe Department of Bioengineering, University of California, RiversideRiverside, CA, United StatesThe Department of Electrical and Computer Engineering, AU MRI Research Center, Auburn UniversityAuburn, AL, United StatesThe Department of Psychology, Auburn UniversityAuburn, AL, United StatesThe Alabama Advanced Imaging Consortium at Auburn University, University of Alabama BirminghamAuburn, AL, United StatesSignificance: Autism is a developmental disorder that is currently diagnosed using behavioral tests which can be subjective. Consequently, objective non-invasive imaging biomarkers of Autism are being actively researched. The common theme emerging from previous functional magnetic resonance imaging (fMRI) studies is that Autism is characterized by alterations of fMRI-derived functional connections in certain brain networks which may provide a biomarker for objective diagnosis. However, identification of individuals with Autism solely based on these measures has not been reliable, especially when larger sample sizes are taken into consideration.Objective: We surmise that metrics derived from Autism subjects may not be highly reproducible within this group leading to poor generalizability. We hypothesize that functional brain networks that are most reproducible within Autism and healthy Control groups separately, but not when the two groups are merged, may possess the ability to distinguish effectively between the groups.Methods: In this study, we propose a “discover-confirm” scheme based upon the assessment of reproducibility of independent components obtained from resting state fMRI (discover) followed by a clustering analysis of these components to evaluate their ability to discriminate between groups in an unsupervised way (confirm).Results: We obtained cluster purity ranging from 0.695 to 0.971 in a data set of 799 subjects acquired from multiple sites, depending on how reproducible the corresponding components were in each group.Conclusion: The proposed method was able to characterize reproducibility of brain networks in Autism and could potentially be deployed in other mental disorders as well.http://journal.frontiersin.org/article/10.3389/fnins.2017.00459/fullautismfMRIindependent componentsreproducibilityclustering
collection DOAJ
language English
format Article
sources DOAJ
author Mohammed A. Syed
Zhi Yang
Zhi Yang
Xiaoping P. Hu
Gopikrishna Deshpande
Gopikrishna Deshpande
Gopikrishna Deshpande
spellingShingle Mohammed A. Syed
Zhi Yang
Zhi Yang
Xiaoping P. Hu
Gopikrishna Deshpande
Gopikrishna Deshpande
Gopikrishna Deshpande
Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data
Frontiers in Neuroscience
autism
fMRI
independent components
reproducibility
clustering
author_facet Mohammed A. Syed
Zhi Yang
Zhi Yang
Xiaoping P. Hu
Gopikrishna Deshpande
Gopikrishna Deshpande
Gopikrishna Deshpande
author_sort Mohammed A. Syed
title Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data
title_short Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data
title_full Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data
title_fullStr Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data
title_full_unstemmed Investigating Brain Connectomic Alterations in Autism Using the Reproducibility of Independent Components Derived from Resting State Functional MRI Data
title_sort investigating brain connectomic alterations in autism using the reproducibility of independent components derived from resting state functional mri data
publisher Frontiers Media S.A.
series Frontiers in Neuroscience
issn 1662-453X
publishDate 2017-09-01
description Significance: Autism is a developmental disorder that is currently diagnosed using behavioral tests which can be subjective. Consequently, objective non-invasive imaging biomarkers of Autism are being actively researched. The common theme emerging from previous functional magnetic resonance imaging (fMRI) studies is that Autism is characterized by alterations of fMRI-derived functional connections in certain brain networks which may provide a biomarker for objective diagnosis. However, identification of individuals with Autism solely based on these measures has not been reliable, especially when larger sample sizes are taken into consideration.Objective: We surmise that metrics derived from Autism subjects may not be highly reproducible within this group leading to poor generalizability. We hypothesize that functional brain networks that are most reproducible within Autism and healthy Control groups separately, but not when the two groups are merged, may possess the ability to distinguish effectively between the groups.Methods: In this study, we propose a “discover-confirm” scheme based upon the assessment of reproducibility of independent components obtained from resting state fMRI (discover) followed by a clustering analysis of these components to evaluate their ability to discriminate between groups in an unsupervised way (confirm).Results: We obtained cluster purity ranging from 0.695 to 0.971 in a data set of 799 subjects acquired from multiple sites, depending on how reproducible the corresponding components were in each group.Conclusion: The proposed method was able to characterize reproducibility of brain networks in Autism and could potentially be deployed in other mental disorders as well.
topic autism
fMRI
independent components
reproducibility
clustering
url http://journal.frontiersin.org/article/10.3389/fnins.2017.00459/full
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