Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact...

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Bibliographic Details
Main Authors: Smith Lucian P., Moodie Stuart L., Bergmann Frank T., Gillespie Colin, Keating Sarah M., König Matthias, Myers Chris J., Swat Maciek J., Wilkinson Darren J., Hucka Michael
Format: Article
Language:English
Published: De Gruyter 2020-07-01
Series:Journal of Integrative Bioinformatics
Subjects:
distributions
modeling
sbml
systems biology
uncertainty
Online Access:https://doi.org/10.1515/jib-2020-0018
Description
Summary:Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact or stochastic values in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Distributions package for SBML Level 3 adds the necessary features to allow models to encode information about the distribution and uncertainty of values underlying a quantity.
ISSN:1613-4516

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