Evaluating DNA Extraction Methods for Community Profiling of Pig Hindgut Microbial Community.

Evaluating DNA Extraction Methods for Community Profiling of Pig Hindgut Microbial Community.

Recovery of high quality PCR-amplifiable DNA has been the general minimal requirement for DNA extraction methods for bulk molecular analysis. However, modern high through-put community profiling technologies are more sensitive to representativeness and reproducibility of DNA extraction method. Here,...

Full description

Bibliographic Details
Main Authors:	Yang Lu, Philip Hugenholtz, Damien John Batstone
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2015-01-01
Series:	PLoS ONE
Online Access:	http://europepmc.org/articles/PMC4641665?pdf=render

Similar Items

The pelvic flexure separates distinct microbial communities in the equine hindgut
by: Kailee J. Reed, et al.
Published: (2021-02-01)

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.
by: Dana Willner, et al.
Published: (2012-01-01)

Caste-specific differences in hindgut microbial communities of honey bees (Apis mellifera).
by: Karen M Kapheim, et al.
Published: (2015-01-01)

Anaerobic carbon monoxide dehydrogenase diversity in the homoacetogenic hindgut microbial communities of lower termites and the wood roach.
by: Eric G Matson, et al.
Published: (2011-04-01)

The Biology and Community Structure of CO₂-Reducing Acetogens in the Termite Hindgut
by: Ottesen, Elizabeth Ann
Published: (2009)

Effect of dietary fiber on the methanogen community in the hindgut of Lantang gilts
by: Cao, Z., et al.
Published: (2016)

Effect of dietary fiber on the methanogen community in the hindgut of Lantang gilts
by: Z. Cao, et al.
Published: (2016-01-01)

Hindgut fermentation in pigs induced by diets with different sources of starch
by: J. Suárez-Belloch, et al.
Published: (2013-06-01)

Use the in vitro gas production technique to simulate the hindgut fermentation of pigs
by: Chung-Nan Chen, et al.

Changes of microbial and metabolome of the equine hindgut during oligofructose-induced laminitis
by: Maimaiti Tuniyazi, et al.
Published: (2021-01-01)

Heat Stress Increases In Vitro Hindgut Fermentation of Distinct Substrates in Iberian Pigs
by: Zaira Pardo, et al.
Published: (2020-11-01)

Development of Electrochemical DNA Biosensor for Equine Hindgut Acidosis Detection
by: Joshua Davies, et al.
Published: (2021-03-01)

Evaluation of the impact of six different DNA extraction methods for the representation of the microbial community associated with human chronic wound infections using a gel-based DNA profiling method
by: Ayomi Dilhari, et al.
Published: (2017-09-01)

Faecal parameters as biomarkers of the equine hindgut microbial ecosystem under dietary change
by: P. Grimm, et al.
Published: (2017-01-01)

Successive DNA extractions improve characterization of soil microbial communities
by: Mauricio R. Dimitrov, et al.
Published: (2017-02-01)

Anaerobic Co-Digestion of Sludge and Organic Food Waste—Performance, Inhibition, and Impact on the Microbial Community
by: Alexander Keucken, et al.
Published: (2018-09-01)

Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling
by: Anne Marie Høier Eriksen, et al.
Published: (2020-01-01)

Impact of DNA Extraction Method on Variation in Human and Built Environment Microbial Community and Functional Profiles Assessed by Shotgun Metagenomics Sequencing
by: Hui-yu Sui, et al.
Published: (2020-05-01)

Correction to: Evaluation of the impact of six different DNA extraction methods for the representation of the microbial community associated with human chronic wound infections using a gel‑based DNA profiling method
by: Ayomi Dilhari, et al.
Published: (2020-11-01)

Factors influencing the pinworm community (Oxyurida : Nematoda) parasitic in the hindgut of the American cockroach, Periplaneta americana
by: Noble, Stewart J.
Published: (2010)

High Genetic Diversity of Microbial Cellulase and Hemicellulase Genes in the Hindgut of Holotrichia parallela Larvae
by: Ping Sheng, et al.
Published: (2015-07-01)

Effects of diet and hindgut protozoa on diet digestibility and microbial concentrations in the cecum and colon of the equine /
by: Moore, Brenda Elaine
Published: (1992)

Robust sampling and preservation of DNA for microbial community profiling in field experiments
by: Anneloes E. Groenenboom, et al.
Published: (2019-03-01)

Effects of Oat Bran on Nutrient Digestibility, Intestinal Microbiota, and Inflammatory Responses in the Hindgut of Growing Pigs
by: Beibei He, et al.
Published: (2018-08-01)

Enzymatically Modified Starch Favorably Modulated Intestinal Transit Time and Hindgut Fermentation in Growing Pigs.
by: M A Newman, et al.
Published: (2016-01-01)

The profiles of dysbiotic microbial communities
by: Paola Brun
Published: (2019-03-01)

Effect of Broussonetia papyrifera silage on the serum indicators, hindgut parameters and fecal bacterial community of Holstein heifers
by: Hanchen Tian, et al.
Published: (2020-10-01)

Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites.
by: Shaomei He, et al.
Published: (2013-01-01)

Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites
by: He, Shaomei, et al.
Published: (2013)

Multidimensional Approach for Investigating the Effects of an Antibiotic–Probiotic Combination on the Equine Hindgut Ecosystem and Microbial Fibrolysis
by: Axelle Collinet, et al.
Published: (2021-03-01)

Microbiology and ration digestibility in the hindgut of the ovine/
by: Lewis, Sherry Marlene,
Published: (1983)

Hindgut fermentation in ruminating Holstein calves
by: Loveland, Jennifer
Published: (2014)

Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities.
by: Gemma Henderson, et al.
Published: (2013-01-01)

Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure.
by: Pierre Plassart, et al.
Published: (2012-01-01)

Comparison of DNA extraction protocols for microbial communities from soil treated with biochar
by: D.C.A. Leite, et al.
Published: (2014-01-01)

Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum.
by: Jiangchao Zhao, et al.
Published: (2012-01-01)

Targeting the Hindgut to Improve Health and Performance in Cattle
by: M. Victoria Sanz-Fernandez, et al.
Published: (2020-10-01)

Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs
by: Lowe Beth A, et al.
Published: (2012-02-01)

Functional Resilience and Response to a Dietary Additive (Kefir) in Models of Foregut and Hindgut Microbial Fermentation In Vitro
by: Gabriel de la Fuente, et al.
Published: (2017-06-01)

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.
by: Mark Davids, et al.
Published: (2016-01-01)

Cannot write session to /tmp/vufind_sessions/sess_68ghidt0h6vbipk1gmo1mndgie