Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training

Early detection of dense harmful algal blooms (HABs) is possible using ocean colour remote sensing. Some algorithms require a training dataset, usually constructed from satellite images with a priori knowledge of the existence of the bloom. This approach can be limited if there is a lack of in situ...

Full description

Bibliographic Details
Main Authors: Victor Martinez-Vicente, Andrey Kurekin, Carolina Sá, Vanda Brotas, Ana Amorim, Vera Veloso, Junfang Lin, Peter I. Miller
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-12-01
Series:Frontiers in Marine Science
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fmars.2020.582960/full
id doaj-edd03dd912f748a7b754a60d5ffd41d2
record_format Article
spelling doaj-edd03dd912f748a7b754a60d5ffd41d22020-12-09T06:44:39ZengFrontiers Media S.A.Frontiers in Marine Science2296-77452020-12-01710.3389/fmars.2020.582960582960Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for TrainingVictor Martinez-Vicente0Andrey Kurekin1Carolina Sá2Vanda Brotas3Ana Amorim4Vera Veloso5Junfang Lin6Peter I. Miller7Remote Sensing Group, Plymouth Marine Laboratory, Plymouth, United KingdomRemote Sensing Group, Plymouth Marine Laboratory, Plymouth, United KingdomMARE, Centro de Ciências Do Mar e Ambiente, Faculdade de Ciências, Universidade de Lisboa, Lisbon, PortugalMARE, Centro de Ciências Do Mar e Ambiente, Faculdade de Ciências, Universidade de Lisboa, Lisbon, PortugalMARE, Centro de Ciências Do Mar e Ambiente, Faculdade de Ciências, Universidade de Lisboa, Lisbon, PortugalMARE, Centro de Ciências Do Mar e Ambiente, Faculdade de Ciências, Universidade de Lisboa, Lisbon, PortugalRemote Sensing Group, Plymouth Marine Laboratory, Plymouth, United KingdomRemote Sensing Group, Plymouth Marine Laboratory, Plymouth, United KingdomEarly detection of dense harmful algal blooms (HABs) is possible using ocean colour remote sensing. Some algorithms require a training dataset, usually constructed from satellite images with a priori knowledge of the existence of the bloom. This approach can be limited if there is a lack of in situ observations, coincident with satellite images. A laboratory experiment collected biological and bio-optical data from a culture of Karenia mikimotoi, a harmful phytoplankton dinoflagellate. These data showed characteristic signals in chlorophyll-specific absorption and backscattering coefficients. The bio-optical data from the culture and a bio-optical model were used to construct a training dataset for an existing statistical classifier. MERIS imagery over the European continental shelf were processed with the classifier using different training datasets. The differences in positive rates of detection of K. mikimotoi between using an algorithm trained with purely manually selected areas on satellite images and using laboratory data as training was overall <1%. The difference was higher, <15%, when using modeled optical data rather than laboratory data, with potential for improvement if local average chlorophyll concentrations are used. Using a laboratory-derived training dataset improved the ability of the algorithm to distinguish high turbidity from high chlorophyll concentrations. However, additional in situ observations of non-harmful high chlorophyll blooms in the area would improve testing of the ability to distinguish harmful from non-harmful high chlorophyll blooms. This approach can be expanded to use additional wavelengths, different satellite sensors and different phytoplankton genera.https://www.frontiersin.org/articles/10.3389/fmars.2020.582960/fullphytoplanktonEnglish channelMERISoptical backscatteringKarenia mikimotoiharmful algal blooms
collection DOAJ
language English
format Article
sources DOAJ
author Victor Martinez-Vicente
Andrey Kurekin
Carolina Sá
Vanda Brotas
Ana Amorim
Vera Veloso
Junfang Lin
Peter I. Miller
spellingShingle Victor Martinez-Vicente
Andrey Kurekin
Carolina Sá
Vanda Brotas
Ana Amorim
Vera Veloso
Junfang Lin
Peter I. Miller
Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training
Frontiers in Marine Science
phytoplankton
English channel
MERIS
optical backscattering
Karenia mikimotoi
harmful algal blooms
author_facet Victor Martinez-Vicente
Andrey Kurekin
Carolina Sá
Vanda Brotas
Ana Amorim
Vera Veloso
Junfang Lin
Peter I. Miller
author_sort Victor Martinez-Vicente
title Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training
title_short Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training
title_full Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training
title_fullStr Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training
title_full_unstemmed Sensitivity of a Satellite Algorithm for Harmful Algal Bloom Discrimination to the Use of Laboratory Bio-optical Data for Training
title_sort sensitivity of a satellite algorithm for harmful algal bloom discrimination to the use of laboratory bio-optical data for training
publisher Frontiers Media S.A.
series Frontiers in Marine Science
issn 2296-7745
publishDate 2020-12-01
description Early detection of dense harmful algal blooms (HABs) is possible using ocean colour remote sensing. Some algorithms require a training dataset, usually constructed from satellite images with a priori knowledge of the existence of the bloom. This approach can be limited if there is a lack of in situ observations, coincident with satellite images. A laboratory experiment collected biological and bio-optical data from a culture of Karenia mikimotoi, a harmful phytoplankton dinoflagellate. These data showed characteristic signals in chlorophyll-specific absorption and backscattering coefficients. The bio-optical data from the culture and a bio-optical model were used to construct a training dataset for an existing statistical classifier. MERIS imagery over the European continental shelf were processed with the classifier using different training datasets. The differences in positive rates of detection of K. mikimotoi between using an algorithm trained with purely manually selected areas on satellite images and using laboratory data as training was overall <1%. The difference was higher, <15%, when using modeled optical data rather than laboratory data, with potential for improvement if local average chlorophyll concentrations are used. Using a laboratory-derived training dataset improved the ability of the algorithm to distinguish high turbidity from high chlorophyll concentrations. However, additional in situ observations of non-harmful high chlorophyll blooms in the area would improve testing of the ability to distinguish harmful from non-harmful high chlorophyll blooms. This approach can be expanded to use additional wavelengths, different satellite sensors and different phytoplankton genera.
topic phytoplankton
English channel
MERIS
optical backscattering
Karenia mikimotoi
harmful algal blooms
url https://www.frontiersin.org/articles/10.3389/fmars.2020.582960/full
work_keys_str_mv AT victormartinezvicente sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT andreykurekin sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT carolinasa sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT vandabrotas sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT anaamorim sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT veraveloso sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT junfanglin sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
AT peterimiller sensitivityofasatellitealgorithmforharmfulalgalbloomdiscriminationtotheuseoflaboratorybioopticaldatafortraining
_version_ 1724388359316439040