Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

<p>Abstract</p> <p>Background</p> <p>The use of computational methods for predicting protein interaction networks will continue to grow with the number of fully sequenced genomes available. The Co-Conservation method, also known as the Phylogenetic profiles method, is a...

Full description

Bibliographic Details
Main Authors:	Hunter Lawrence, Karimpour-Fard Anis, Gill Ryan T
Format:	Article
Language:	English
Published:	BMC 2007-10-01
Series:	BMC Genomics
Online Access:	http://www.biomedcentral.com/1471-2164/8/393

Similar Items

The topology of the bacterial co-conserved protein network and its implications for predicting protein function
by: Leach Sonia M, et al.
Published: (2008-06-01)

Predicting protein linkages in bacteria: Which method is best depends on task
by: Leach Sonia M, et al.
Published: (2008-09-01)

Phylogenetic analysis of modularity in protein interaction networks
by: Bebek Gurkan, et al.
Published: (2009-10-01)

Construction and analysis of protein-protein interaction network associated with human sperm-egg interaction
by: Fard Jahromi, Soudabeh Sabetian
Published: (2015)

Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
by: Liao Li, et al.
Published: (2007-01-01)

Prediction of Protein-Protein Interactions Related to Protein Complexes Based on Protein Interaction Networks
by: Peng Liu, et al.
Published: (2015-01-01)

Predicting protein phenotypes based on protein-protein interaction network.
by: Lele Hu, et al.
Published: (2011-03-01)

Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
by: Kelly William P, et al.
Published: (2010-09-01)

Improved prediction of critical residues for protein function based on network and phylogenetic analyses
by: Bredesen Dale E, et al.
Published: (2005-08-01)

Prediction and characterization of protein-protein interaction networks in swine
by: Wang Fen, et al.
Published: (2012-01-01)

Protein function prediction using protein interaction networks
by: Kao, Kuo-Ching, et al.
Published: (2009)

Combining phylogenetic profiling-based and machine learning-based techniques to predict functional related proteins.
by: Tzu-Wen Lin, et al.
Published: (2013-01-01)

HKC: An Algorithm to Predict Protein Complexes in Protein-Protein Interaction Networks
by: Xiaomin Wang, et al.
Published: (2011-01-01)

Protein function prediction using annotated protein-protein interaction networks
by: Braute, Petter, et al.
Published: (2005)

Network-based prediction of protein interactions
by: István A. Kovács, et al.
Published: (2019-03-01)

Protein-protein interactions in membrane proteins
by: Gill, Katrina Louise
Published: (2004)

Improving Protein-Protein Interaction Sites Prediction by Using Structure-Based Profiles
by: I-pin Su, et al.
Published: (2011)

The prediction of protein-protein interaction networks in rice blast fungus
by: Zhang Ziding, et al.
Published: (2008-11-01)

Predicting protein functions by relaxation labelling protein interaction network
by: Jiang Hui, et al.
Published: (2010-01-01)

Network tools forthe analysis and prediction of protein-protein interactions
by: Weston, Kevin T. (Kevin Thomas), 1981-
Published: (2005)

Evolutionary analysis and interaction prediction for protein-protein interaction network in geometric space.
by: Lei Huang, et al.
Published: (2017-01-01)

Prediction of Essential Proteins and Functional Modules from Protein-Protein Interaction Networks
by: Chia-Hao Chin, et al.
Published: (2010)

On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins.
by: Edwin Rodriguez Horta, et al.
Published: (2021-05-01)

Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks
by: Ozaki Tomonobu, et al.
Published: (2011-02-01)

Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network.
by: Jialiang Huang, et al.
Published: (2013-01-01)

Prediction of Functional Associated Proteins Using Topological Similarity in Protein-Protein Interaction Network
by: Yu-Wei Chiu, et al.

Combining sequence and network information to enhance protein–protein interaction prediction
by: Leilei Liu, et al.
Published: (2020-12-01)

Protein Interaction networks and their applications to protein characterization and cancer genes prediction
by: Aragüés Peleato, Ramón
Published: (2007)

Predicting Protein-Protein Interactions with a Network-based Motif Miner
by: Chi-Yuan Yu, et al.
Published: (2009)

Structure-based Prediction of Protein-protein Interaction Networks across Proteomes
by: Maheshwari, Surabhi
Published: (2017)

Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties.
by: Lele Hu, et al.
Published: (2011-01-01)

Phylogenetic Inference for Multidomain Proteins
by: Stolzer, Maureen
Published: (2011)

Phylogenetic analysis of otospiralin protein
by: Ibrahim Torktaz, et al.
Published: (2016-01-01)

Protein Interface Complementarity and Gene Duplication Improve Link Prediction of Protein-Protein Interaction Network
by: Yu Chen, et al.
Published: (2020-04-01)

Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions
by: Xiaoxiong Zheng, et al.
Published: (2017-10-01)

Protein Function Prediction Using Function Associations in Protein–Protein Interaction Network
by: Pingping Sun, et al.
Published: (2018-01-01)

Predicting the Effect of Mutations on Protein-Protein Binding Interactions through Structure-Based Interface Profiles.
by: Jeffrey R Brender, et al.
Published: (2015-10-01)

To investigate the subcellular localisation of CBP (Creb-binding protein) and its interacting proteins
by: Ryan, Colm M.
Published: (2006)

Human protein-protein interaction prediction
by: Scott Michelle S, et al.
Published: (2010-12-01)

Analysis and prediction of protein-protein interactions
by: Walker-Taylor, Alice
Published: (2003)