Novel Metrics to Characterize In Vitro Pollen Tube Growth Performance of Apple Cultivars

• Main Authors: Stefan Roeder, Sara Serra, Stefano Musacchi
• Format: Article
• Language: English
• Published: MDPI AG 2021-07-01
• Series: Plants
• Subjects: pollen viability; <i>Malus domestica</i> (Borkh.); in vitro pollen germination assay; categorization
• Online Access: https://www.mdpi.com/2223-7747/10/7/1460

In vitro germination assays are frequently used in screening trials to evaluate the pollen viability of pollinizers. To be effective, screening trials must have defined threshold criteria, from which individuals can then be assessed. However, despite decades of research on pollen viability, no established threshold is available to categorize apple cultivars based on their in vitro pollen tube lengths. This study aimed to identify and characterize the subgroups of cultivars based on their pollen tube growth performance. In vitro pollen tube lengths of 41 individuals were determined by incubating samples on artificial germination media at 15 and 25 °C. A six-number summary statistic was calculated, and hierarchical clustering on principal component (HCPC) analysis was used to determine and characterize subgroups. Furthermore, a decision tree model was used to predict class membership for future datasets. HCPC analysis partitioned the 41 individuals into three subgroups with different performances. The decision tree quickly predicted the cluster membership based on the second quartile at 15 °C and the third quartile at 25 °C. The thresholds from the decision tree can be used to characterize new observations. The use of the methods will be demonstrated using a case study with 29 apple accessions.