Relationship between gene co-expression and probe localization on microarray slides

Relationship between gene co-expression and probe localization on microarray slides

<p>Abstract</p> <p>Background</p> <p>Microarray technology allows simultaneous measurement of thousands of genes in a single experiment. This is a potentially useful tool for evaluating co-expression of genes and extraction of useful functional and chromosomal structura...

Full description

Bibliographic Details
Main Authors:	Qian Jiang, Yu Haiyuan, Kluger Yuval, Gerstein Mark
Format:	Article
Language:	English
Published:	BMC 2003-12-01
Series:	BMC Genomics
Online Access:	http://www.biomedcentral.com/1471-2164/4/49

Similar Items

Assessing probe-specific dye and slide biases in two-color microarray data
by: Goldberg Zelanna, et al.
Published: (2008-07-01)

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays
by: Jee Justin, et al.
Published: (2008-12-01)

Efficiency Enhancement of DNA Hybridization by Pre-Hybridization on Microarrayed Gene Probes
by: Kai-Ren Jiang, et al.
Published: (2009)

The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics.
by: Haiyuan Yu, et al.
Published: (2007-04-01)

Detecting essential genes in microarray dataset with unequal number of gene probes

Reannotation and consolidation of microarray probes for the meta-analysis of gene expression across multiple cell types
by: Schneider, Stephanie G.
Published: (2016)

Identifying set-wise differential co-expression in gene expression microarray data
by: Kim Jihun, et al.
Published: (2009-04-01)

Comparison of threshold selection methods for microarray gene co-expression matrices
by: Saxton Arnold M, et al.
Published: (2009-12-01)

Analysis of promoter regions of co-expressed genes identified by microarray analysis
by: Höglund Mattias, et al.
Published: (2006-08-01)

A general framework for optimization of probes for gene expression microarray and its application to the fungus <it>Podospora anserina</it>
by: Bidard Frédérique, et al.
Published: (2010-06-01)

Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression
by: Enkemann Steven A, et al.
Published: (2006-06-01)

A robust method for estimating gene expression states using Affymetrix microarray probe level data
by: Satoh Kenichi, et al.
Published: (2010-04-01)

Determination of the differentially expressed genes in microarray experiments using local FDR
by: Daudin J-J, et al.
Published: (2004-09-01)

Jetset: selecting the optimal microarray probe set to represent a gene
by: Li Qiyuan, et al.
Published: (2011-12-01)

GeneSieve: A Probe Selection Strategy for cDNA Microarrays
by: Shukla, Maulik
Published: (2011)

Correction: Determination of the differentially expressed genes in microarray experiments using local FDR
by: Daudin JJ, et al.
Published: (2005-03-01)

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
by: Kohane Isaac S, et al.
Published: (2005-04-01)

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability.
by: Karolis Uziela, et al.
Published: (2015-01-01)

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
by: Ge Huanying, et al.
Published: (2008-04-01)

Microarray amplification bias: loss of 30% differentially expressed genes due to long probe – poly(A)-tail distances
by: Timens Wim, et al.
Published: (2007-08-01)

Empirical Bayes models for multiple probe type microarrays at the probe level
by: Rudemo Mats, et al.
Published: (2008-03-01)

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes
by: Paules Richard S, et al.
Published: (2007-11-01)

Co-expressed gene groups analysis (CGGA): An automatic tool for the interpretation of microarray experiments
by: Martinez Ricardo, et al.
Published: (2006-12-01)

An approach for analyzing and classifying microarray data using gene co-expression networks cycles
by: Dillenburg, Fabiane Cristine
Published: (2017)

A Weighted Gene Co-expression Network Analysis for Streptococcus sanguinis Microarray Experiments
by: Dvergsten, Erik C
Published: (2016)

An approach for analyzing and classifying microarray data using gene co-expression networks cycles
by: Dillenburg, Fabiane Cristine
Published: (2017)

An approach for analyzing and classifying microarray data using gene co-expression networks cycles
by: Dillenburg, Fabiane Cristine
Published: (2017)

The Local Maximum Clustering Method and Its Application in Microarray Gene Expression Data Analysis
by: Chen Yidong, et al.
Published: (2004-01-01)

Detection and correction of probe-level artefacts on microarrays
by: Petri Tobias, et al.
Published: (2012-05-01)

Probe Level Analysis of Affymetrix Microarray Data
by: Kennedy, Richard Ellis
Published: (2008)

A strategy for oligonucleotide microarray probe reduction
by: Antipova, Alena A., et al.
Published: (2010)

Collaborative representation-based classification of microarray gene expression data.
by: Lizhen Shen, et al.
Published: (2017-01-01)

Preparation of Aluminum Oxide-Coated Glass Slides for Glycan Microarrays
by: Susan Yu Tseng, et al.
Published: (2016-11-01)

Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
by: Seifert Georg J, et al.
Published: (2008-08-01)

t-Test at the Probe Level: An Alternative Method to Identify Statistically Significant Genes for Microarray Data
by: Marcelo Boareto, et al.
Published: (2014-12-01)

Getting started in gene expression microarray analysis.
by: Donna K Slonim, et al.
Published: (2009-10-01)

Classification across gene expression microarray studies
by: Kuner Ruprecht, et al.
Published: (2009-12-01)

Multivariate classification of gene expression microarray data
by: Botella Pérez, Cristina
Published: (2010)

Washing scaling of GeneChip microarray expression
by: Krohn Knut, et al.
Published: (2010-05-01)

Reliability Verification of Microarray Gene Expression Database
by: C.W. LIANG, et al.
Published: (2005)

Cannot write session to /tmp/vufind_sessions/sess_44kus9ssritol7ue27dahef0uh